NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25086.1 Public Mus musculus 11 Pipox 23 108 98 CCDS HistoryNCBI Gene:19193Re-query CCDS DB by CCDS ID:25086.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017597.4 ENSMUSP00000017597.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017597.4Link to Ensembl Protein Viewer:ENSMUSP00000017597.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000017597Re-query CCDS DB by Protein ID:ENSMUSP00000017597
Original member Current member NCBI NM_008952.2 NP_032978.2 Accepted alive Link to Nucleotide Sequence:NM_008952.2Link to Protein Sequence:NP_032978.2Re-query CCDS DB by Nucleotide ID:NM_008952Re-query CCDS DB by Protein ID:NP_032978Link to BLAST:NP_032978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032978.2 390 Q9D826 390 100% 0 0

Chromosomal Locations for CCDS 25086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77881124 77881254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77881501 77881576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77882118 77882276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77882617 77882763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77883129 77883311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77883779 77883992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77892112 77892260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77893667 77893780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCTGCTCAGACAGATTTCTGGGATGCTATTGTGATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGT
ACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAG
CTCACATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGATGAAGGAA
TGTTATCAGACATGGGCCCAGCTGGAGCGTGAAGCCGGAACCCAGTTACACAGGCAGACTGAGCTCTTAC
TTCTGGGGACGAAGGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCA
TGAGTATCTTTCGTCAGTGGATTTAAAGCAACGCTTTCCAAACATTCGGTTCACCAGGGGAGAAGTGGGG
CTCTTGGACAAGACTGGAGGTGTCCTCTATGCAGACAAGGCCCTCAGAGCCCTCCAGCATATAATTTGTC
AGCTAGGAGGCACTGTGTGTGATGGAGAGAAGGTAGTGGAGATAAGACCTGGTCTACCCGTCACAGTGAA
AACCACCTTGAAGAGCTACCAAGCCAACAGCTTGGTCATCACTGCTGGTCCCTGGACCAACCGGCTTCTG
CATCCTCTGGGGATTGAGTTGCCTCTCCAGACCCTTAGGATCAATGTGTGTTACTGGCGAGAGAAGGTCC
CTGGGAGCTATGGTGTATCACAAGCTTTTCCATGCATCCTGGGTCTGGATCTGGCCCCCCACCACATCTA
TGGACTGCCAGCATCCGAGTACCCGGGGCTGATGAAGATCTGCTATCACCATGGTGACAATGTGGACCCA
GAGGAGCGGGACTGCCCCAAAACCTTCTCAGACATCCAAGACGTTCAAATTCTATGCCACTTTGTCAGAG
ATCATTTACCAGGCCTGCGGGCTGAGCCAGACATCATGGAACGCTGCATGTACACGAATACTCCTGATGA
GCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTGGACATGGA
TTCAAGTTGGCCCCTGTTGTGGGGAAGATCCTCTATGAGCTAAGCATGAAATTACCCCCATCCTATGACT
TGGCTCCGTTTCGAATGAGTCGCTTCTCTACGCTGAGCAAAGCCCACCTTTGA

Translation (390 aa):
MAAQTDFWDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFYTMMMKE
CYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQRFPNIRFTRGEVG
LLDKTGGVLYADKALRALQHIICQLGGTVCDGEKVVEIRPGLPVTVKTTLKSYQANSLVITAGPWTNRLL
HPLGIELPLQTLRINVCYWREKVPGSYGVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDP
EERDCPKTFSDIQDVQILCHFVRDHLPGLRAEPDIMERCMYTNTPDEHFILDCHPKYDNIVIGAGFSGHG
FKLAPVVGKILYELSMKLPPSYDLAPFRMSRFSTLSKAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH