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Report for CCDS17097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17097.1 Public Mus musculus 2 Ptgis 23 108 98 CCDS HistoryNCBI Gene:19223Re-query CCDS DB by CCDS ID:17097.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018113.7 ENSMUSP00000018113.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018113.7Link to Ensembl Protein Viewer:ENSMUSP00000018113.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018113Re-query CCDS DB by Protein ID:ENSMUSP00000018113
Original member NCBI NM_008968.4 NP_032994.1 Updated not alive Link to Nucleotide Sequence:NM_008968.4Link to Protein Sequence:NP_032994.1Re-query CCDS DB by Nucleotide ID:NM_008968Re-query CCDS DB by Protein ID:NP_032994
Current member NCBI NM_008968.5 NP_032994.1 Accepted alive Link to Nucleotide Sequence:NM_008968.5Link to Protein Sequence:NP_032994.1Re-query CCDS DB by Nucleotide ID:NM_008968Re-query CCDS DB by Protein ID:NP_032994Link to BLAST:NP_032994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032994.1 501 O35074 501 100% 0 0

Chromosomal Locations for CCDS 17097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167203324 167203468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167206734 167206885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167207182 167207363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167208181 167208349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167214808 167214989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167221209 167221360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167223985 167224128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167225276 167225454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167227462 167227585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167240344 167240420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGTCCTGGGCTGCTCTGCTCGGCCTCCTGGCCGTGCTATTGCTGTTGCTGCTGCTGCTGAGCCGCCGGC
GCGCGCGGAGACCTGGTGAGCCTCCGTTGGACCTGGGCAGCATCCCCTGGCTGGGCCATGCCTTGGAGTT
TGGGAGAGATGCTGCCAGCTTCCTTACCAGGATGAAGGAAAAGCACGGTGACATATTTACTGTGCTGGTG
GGGGGCAGATACGTCACTGTTCTCCTGGACCCACACTCTTACGACACAGTGGTGTGGGAGCTGCGTACAC
GGCTGGACTTCCATCCCTATGCCATCTTCCTCATGGAGAGGATTTTTGATCTGCAGCTTCCAAATTTCAA
CCCCAGTGAGGAGAAGGCCAGGATGAAGCCGACGCTCATGCACAGAGACCTGCAGGCGCTCACAGAAGCC
ATGTATACCAACCTTCGCACGGTCCTGCTGGGTGACTCCACAGAAGCAGGCAGTGGCTGGCAGGAGACAG
GTCTCCTTGAGTTCTCCTACAACGCCCTGCTCAGCGCCGGCTACCTGACCCTATATGGAGTGGAGGCCTC
ACCACGCACCCATGAGAGTCAGGCCCAAGATCGTGTCCACTCAGCGGATGTTTTCCATACCTTCCGCCAG
CTGGATCTGCTGCTCCCCAAACTGGCTCGAGGCTCCTTGTCAGCGGGGGATAAAGACCATGCATGCAGTG
TCAAAAACCGCCTGTGGAAGCTGCTGTCCCCAGCCAGGCTGGCCTCCAGGGCTGACCGGAGCAGCTGGCT
GGAGAGTTATCTGAGACATCTTGAGGAGATGGGGGTGTCAGAGGAGATGCAGGCCCGGGCTCTGGTGTTG
CAGCTCTGGGCCACACAGGGGAATATGGGTCCCACGGCCTTCTGGCTCCTTCTTTTCCTCCTCAAGAATC
CGGAAGCCCTCGCCGCTGTCCGTGCAGAGCTGAAGCACACGGTCTGGCAAGCAGAGCAGCCTGTTTCACA
GATGACCACACTCCCACAGAAGATTCTAGACAGCATGCCTGTGCTAGACAGTGTGCTCAATGAGACACTC
CGGCTCACGGCTGCCCCCTTCATCACCCGTGAGGTCATGGCAGACCTGGCCTTGCCTATGGCAGACGGGA
GGGAATTCTCTCTTCGACGTGGTGACCGCCTTCTCCTCTTTCCCTTCCTGAGTCCCCAGAAGGACCCAGA
AATCTACACAGAGCCTGAGGTGTTTAAATACAACCGATTCTTGAACCCAGATGGATCTGAAAAGAAAGAT
TTTTACAAAGATGGGAAACGGCTGAAGAATTACAACATGCCATGGGGCGCAGGGCACAACCAGTGCCTGG
GGAAGAGTTATGCCATCAACAGCATCAAACAATTTGTCGTCCTACTGCTGACTCATTTCGACCTGGAGCT
GGGCAGCGAGGACACAGAGGTTCCTGAGTTTGACCTCAGCAGATATGGCTTCGGTCTGATGCAGCCAGAG
GAAGACGTGCCCATCCGGTACCGTGCCAGGCTGTGA

Translation (501 aa):
MSWAALLGLLAVLLLLLLLLSRRRARRPGEPPLDLGSIPWLGHALEFGRDAASFLTRMKEKHGDIFTVLV
GGRYVTVLLDPHSYDTVVWELRTRLDFHPYAIFLMERIFDLQLPNFNPSEEKARMKPTLMHRDLQALTEA
MYTNLRTVLLGDSTEAGSGWQETGLLEFSYNALLSAGYLTLYGVEASPRTHESQAQDRVHSADVFHTFRQ
LDLLLPKLARGSLSAGDKDHACSVKNRLWKLLSPARLASRADRSSWLESYLRHLEEMGVSEEMQARALVL
QLWATQGNMGPTAFWLLLFLLKNPEALAAVRAELKHTVWQAEQPVSQMTTLPQKILDSMPVLDSVLNETL
RLTAAPFITREVMADLALPMADGREFSLRRGDRLLLFPFLSPQKDPEIYTEPEVFKYNRFLNPDGSEKKD
FYKDGKRLKNYNMPWGAGHNQCLGKSYAINSIKQFVVLLLTHFDLELGSEDTEVPEFDLSRYGFGLMQPE
EDVPIRYRARL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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