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Report for CCDS21756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21756.1 Public Mus musculus 7 Pth 23 108 98 CCDS HistoryNCBI Gene:19226Re-query CCDS DB by CCDS ID:21756.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079793.6 ENSMUSP00000078723.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079793.6Link to Ensembl Protein Viewer:ENSMUSP00000078723.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079793Re-query CCDS DB by Protein ID:ENSMUSP00000078723
Original member Current member NCBI NM_020623.2 NP_065648.1 Accepted alive Link to Nucleotide Sequence:NM_020623.2Link to Protein Sequence:NP_065648.1Re-query CCDS DB by Nucleotide ID:NM_020623Re-query CCDS DB by Protein ID:NP_065648Link to BLAST:NP_065648.1

Chromosomal Locations for CCDS 21756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 113385817 113386078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113386195 113386280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGATGTCTGCAAACACCGTGGCTAAAGTGATGATCATCATGCTGGCAGTCTGTCTTCTTACCCAAACGG
ATGGGAAACCCGTGAGGAAGAGAGCTGTCAGTGAAATACAGCTTATGCACAACCTGGGCAAACACCTGGC
CTCCATGGAGAGGATGCAATGGCTGAGAAGGAAGCTGCAAGATATGCACAATTTTGTTAGTCTTGGAGTC
CAAATGGCTGCCAGAGATGGCAGTCACCAGAAGCCCACCAAGAAGGAGGAAAATGTCCTTGTTGATGGCA
ATCCAAAAAGTCTTGGTGAGGGAGACAAAGCTGATGTGGATGTATTAGTTAAATCAAAATCTCAGTAA

Translation (115 aa):
MMSANTVAKVMIIMLAVCLLTQTDGKPVRKRAVSEIQLMHNLGKHLASMERMQWLRRKLQDMHNFVSLGV
QMAARDGSHQKPTKKEENVLVDGNPKSLGEGDKADVDVLVKSKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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