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Report for CCDS19102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19102.1 Public Mus musculus 5 Ptpn12 23 108 98 CCDS HistoryNCBI Gene:19248Re-query CCDS DB by CCDS ID:19102.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030556.7 ENSMUSP00000030556.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030556.7Link to Ensembl Protein Viewer:ENSMUSP00000030556.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030556Re-query CCDS DB by Protein ID:ENSMUSP00000030556
Original member NCBI NM_011203.3 NP_035333.2 Updated not alive Link to Nucleotide Sequence:NM_011203.3Link to Protein Sequence:NP_035333.2Re-query CCDS DB by Nucleotide ID:NM_011203Re-query CCDS DB by Protein ID:NP_035333
Current member NCBI NM_011203.4 NP_035333.2 Accepted alive Link to Nucleotide Sequence:NM_011203.4Link to Protein Sequence:NP_035333.2Re-query CCDS DB by Nucleotide ID:NM_011203Re-query CCDS DB by Protein ID:NP_035333Link to BLAST:NP_035333.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035333.2 775 P35831 775 100% 0 0

Chromosomal Locations for CCDS 19102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 20987433 20987494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20989007 20989108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20991394 20991424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20992709 20992776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20993230 20993298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20997783 20998756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21001272 21001357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21002423 21002518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21002617 21002694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21005349 21005415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21009442 21009584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21011685 21011744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21014694 21014765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21015711 21015749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21019213 21019308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21022018 21022094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21029776 21029884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21055649 21055747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGGAGCAAGTGGAGATCCTGAGGAGGTTCATCCAGAGGGTCCAGGCCATGAAGAGTCCGGATCACAATG
GGGAGGACAACTTCGCCCGGGACTTCATGCGATTGAGAAGATTGTCTACCAAATATAGAACAGAAAAGAT
TTATCCCACAGCCACTGGAGAAAAAGAAGAAAATGTTAAAAAGAACAGATATAAGGACATACTGCCATTT
GATCACAGCCGAGTTAAGTTGACTTTGAAGACTCCATCCCAAGATTCAGATTATATCAATGCAAATTTTA
TTAAGGGTGTGTATGGGCCAAAAGCATATGTGGCAACCCAAGGGCCTTTGGCGAATACAGTCATAGACTT
CTGGAGGATGATATGGGAGTATAATGTTGTGATCATCGTGATGGCCTGTCGAGAATTTGAGATGGGAAGG
AAAAAGTGTGAGCGCTACTGGCCTTTGTATGGAGAAGATCCTATAACATTTGCACCATTTAAAATTTCTT
GTGAAAATGAACAAGCAAGAACCGACTACTTCATCCGAACACTTTTACTTGAATTTCAAAATGAATCCCG
TCGGCTCTATCAGTTTCATTACGTGAACTGGCCAGACCATGATGTTCCTTCGTCATTTGATTCTATTCTG
GACATGATAAGCTTAATGAGGAAATACCAAGAACATGAAGATGTGCCTATTTGTATTCATTGCAGTGCAG
GCTGTGGACGAACAGGTGCTATTTGTGCCATAGATTACACGTGGAACTTACTGAAAGCAGGGAAAATTCC
AGAGGAATTTAATGTATTTAATTTAATACAAGAAATGAGAACACAGAGGCACTCGGCAGTACAAACAAAG
GAGCAGTATGAACTTGTTCATAGGGCTATTGCTCAACTGTTTGAAAAACAGCTACAACTGTATGAAATTC
ATGGAGCACAGAAGATCGCTGATGGTAATGAAATTACCACTGGAACTATGGTCAGTTCCATTGATAGCGA
GAAGCAAGACTCTCCTCCGCCAAAGCCACCGCGGACTCGAAGTTGCCTTGTAGAAGGGGATGCCAAGGAA
GAAATACTACAGCCACCAGAACCTCACCCGGTGCCACCCATCCTGACGCCATCACCTCCTTCAGCCTTCC
CAACCGTTACCACTGTGTGGCAGGACAGTGACAGGTACCACCCAAAGCCAGTGCTGCACATGGCCTCACC
AGAGCAACACCCAGCCGACCTCAACAGAAGCTATGATAAATCAGCGGACCCAATGGGGAAAAGTGAATCA
GCTATTGAGCACATAGATAAGAAGTTAGAGCGCAATTTAAGTTTTGAGATTAAGAAAGTCCCTCTCCAAG
AAGGGCCCAAAAGTTTTGATGGGAACACACTCTTGAATAGGGGACATGCGATTAAAATTAAATCTGCTTC
ATCTTCTGTAGTTGACAGAACCTCTAAACCACAGGAGTTAAGTGCAGGTGCCCTAAAGGTTGATGATGTA
TCTCAGAATTCTTGCGCGGACTGTAGTGCGGCTCATTCACACAGAGCTGCTGAGTCGTCAGAGGAGTCCC
AGAGCAACTCACACACACCTCCACGGCCAGACTGCTTGCCTCTCGATAAGAAAGGACACGTAACGTGGTC
ACTTCATGGACCTGAAAATGCCACACCTGTACCCGACTCACCTGACGGCAAATCCCCAGATAATCATTCT
CAGACTCTGAAAACCGTGAGTTCCACACCCAACTCCACCGCAGAAGAGGAAGCCCACGATCTTACAGAGC
ACCACAACAGCTCCCCTCTGTTGAAAGCTCCCCTCAGCTTTACCAACCCTCTTCACTCTGACGACTCGGA
CTCAGACGGAGGGAGCTCTGATGGTGCTGTGACCAGGAACAAAACTAGCATTTCAACAGCAAGTGCCACA
GTGTCTCCTGCCAGTAGTGCTGAGAGTGCTTGCACTAGGAGAGTATTGCCGATGTCCATTGCCAGACAGG
AAGTAGCAGGCACGCCGCATTCAGGTGCTGAGAAAGATGCTGATGTTAGTGAGGAGTCGCCTCCTCCTTT
ACCTGAACGAACTCCTGAGTCTTTTGTATTAGCAGATATGCCTGTAAGACCTGAGTGGCATGAACTTCCA
AATCAGGAGTGGTCTGAACAAAGGGAATCTGAAGGCTTGACAACCTCTGGAAATGAAAAACATGATGCAG
GGGGCATCCACACAGAGGCTTCTGCAGACTCTCCACCTGCTTTCAGTGACAAGAAAGATCAAATAACAAA
AAGTCCAGCAGAAGTCACAGATATTGGTTTTGGTAATCGCTGTGGAAAACCTAAAGGACCAAGAGAGCCA
CCTTCAGAATGGACATGA

Translation (775 aa):
MEQVEILRRFIQRVQAMKSPDHNGEDNFARDFMRLRRLSTKYRTEKIYPTATGEKEENVKKNRYKDILPF
DHSRVKLTLKTPSQDSDYINANFIKGVYGPKAYVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGR
KKCERYWPLYGEDPITFAPFKISCENEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSIL
DMISLMRKYQEHEDVPICIHCSAGCGRTGAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSAVQTK
EQYELVHRAIAQLFEKQLQLYEIHGAQKIADGNEITTGTMVSSIDSEKQDSPPPKPPRTRSCLVEGDAKE
EILQPPEPHPVPPILTPSPPSAFPTVTTVWQDSDRYHPKPVLHMASPEQHPADLNRSYDKSADPMGKSES
AIEHIDKKLERNLSFEIKKVPLQEGPKSFDGNTLLNRGHAIKIKSASSSVVDRTSKPQELSAGALKVDDV
SQNSCADCSAAHSHRAAESSEESQSNSHTPPRPDCLPLDKKGHVTWSLHGPENATPVPDSPDGKSPDNHS
QTLKTVSSTPNSTAEEEAHDLTEHHNSSPLLKAPLSFTNPLHSDDSDSDGGSSDGAVTRNKTSISTASAT
VSPASSAESACTRRVLPMSIARQEVAGTPHSGAEKDADVSEESPPPLPERTPESFVLADMPVRPEWHELP
NQEWSEQRESEGLTTSGNEKHDAGGIHTEASADSPPAFSDKKDQITKSPAEVTDIGFGNRCGKPKGPREP
PSEWT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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