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Report for CCDS25743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25743.1 Public Mus musculus 11 Arhgdia 23 108 98 CCDS HistoryNCBI Gene:192662Re-query CCDS DB by CCDS ID:25743.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067936.5 ENSMUSP00000063714.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067936.5Link to Ensembl Protein Viewer:ENSMUSP00000063714.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067936Re-query CCDS DB by Protein ID:ENSMUSP00000063714
Original member Current member EBI ENSMUST00000106197.9 ENSMUSP00000101803.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106197.9Link to Ensembl Protein Viewer:ENSMUSP00000101803.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106197Re-query CCDS DB by Protein ID:ENSMUSP00000101803
Original member Current member NCBI NM_001363425.1 NP_001350354.1 Accepted alive Link to Nucleotide Sequence:NM_001363425.1Link to Protein Sequence:NP_001350354.1Re-query CCDS DB by Nucleotide ID:NM_001363425Re-query CCDS DB by Protein ID:NP_001350354Link to BLAST:NP_001350354.1
Original member Current member NCBI NM_133796.8 NP_598557.3 Accepted alive Link to Nucleotide Sequence:NM_133796.8Link to Protein Sequence:NP_598557.3Re-query CCDS DB by Nucleotide ID:NM_133796Re-query CCDS DB by Protein ID:NP_598557Link to BLAST:NP_598557.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350354.1 204 Q99PT1 204 100% 0 0
NP_598557.3 204 Q99PT1 204 100% 0 0

Chromosomal Locations for CCDS 25743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120579231 120579430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120579516 120579579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120579668 120579744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120579967 120580050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120580182 120580371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCAGAACAGGAACCCACTGCTGAGCAGCTTGCGCAGATAGCTGCAGAGAATGAGGAAGATGAGCACT
CTGTGAACTACAAGCCTCCAGCCCAGAAGAGCATCCAGGAGATCCAGGAACTGGACAAGGACGATGAAAG
CCTCCGAAAGTACAAGGAGGCCCTGCTGGGCCGAGTAGCTGTCTCTGCAGACCCCAACGTCCCCAATGTC
ATTGTGACTCGACTGACCTTGGTATGCAGCACTGCCCCAGGCCCTCTGGAACTGGACCTGACAGGTGATC
TGGAGAGCTTCAAGAAACAGTCGTTTGTCTTGAAGGAAGGTGTGGAGTACCGGATAAAAATCTCTTTCCG
GGTGAACAGAGAGATCGTGTCCGGCATGAAGTACATCCAACACACATACAGGAAAGGGGTCAAAATTGAC
AAGACTGACTACATGGTCGGGAGCTATGGGCCGAGGGCCGAGGAGTATGAGTTCCTGACACCCATGGAGG
AGGCTCCCAAAGGCATGCTTGCTCGGGGCAGTTACAACATCAAGTCGCGCTTCACAGATGACGACAAGAC
TGACCACCTGTCCTGGGAGTGGAATCTCACCATCAAAAAGGAGTGGAAGGACTGA

Translation (204 aa):
MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNV
IVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKID
KTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEWKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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