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Report for CCDS30110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30110.1 Public Mus musculus X Rab33a 23 108 98 CCDS HistoryNCBI Gene:19337Re-query CCDS DB by CCDS ID:30110.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033430.2 ENSMUSP00000033430.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033430.2Link to Ensembl Protein Viewer:ENSMUSP00000033430.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033430Re-query CCDS DB by Protein ID:ENSMUSP00000033430
Original member NCBI NM_011228.2 NP_035358.1 Updated not alive Link to Nucleotide Sequence:NM_011228.2Link to Protein Sequence:NP_035358.1Re-query CCDS DB by Nucleotide ID:NM_011228Re-query CCDS DB by Protein ID:NP_035358
Current member NCBI NM_011228.3 NP_035358.1 Accepted alive Link to Nucleotide Sequence:NM_011228.3Link to Protein Sequence:NP_035358.1Re-query CCDS DB by Nucleotide ID:NM_011228Re-query CCDS DB by Protein ID:NP_035358Link to BLAST:NP_035358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035358.1 237 P97950 237 100% 0 0

Chromosomal Locations for CCDS 30110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48519601 48519858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48529649 48530104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCACAGCCCATCCTGGGCCATGGGAGCCTGCAGCCCGCCTCAGCTGCTGGCTTGGCATCCTTGGAGC
TCGACTCATCGATGGACCAGTACGTGCAGATTCGCATTTTCAAAATCATCGTGATTGGGGATTCCAACGT
GGGCAAGACCTGCCTGACCTTCCGCTTCTGCGGGGGTACTTTCCCAGACAAGACTGAGGCCACTATCGGT
GTGGACTTCAGGGAGAAGACCGTGGAAATCGAGGGCGAGAAGATCAAGGTTCAGGTGTGGGACACGGCAG
GCCAAGAACGCTTCCGTAAAAGCATGGTTGAGCATTACTACCGCAACGTGCATGCCGTGGTCTTTGTCTA
TGACGTCACCAAGATGACCTCCTTCACCAACTTAAAAATGTGGATCCAGGAATGCAACGGGCATGCTGTG
CCCCCACTCGTCCCCAAGGTGCTTGTGGGTAACAAGTGTGACTTGAGGGAACAGATCCAGGTACCCTCCA
ACTTAGCCCTGAAATTTGCTGACGCTCATAACATGCTCTTGTTTGAGACATCAGCCAAGGACCCCAAAGA
AAGCCAGAATGTGGAGTCGATCTTCATGTGCCTGGCTTGCCGACTTAAGGCCCAGAAATCCCTCTTGTAC
CGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGTAAAGCCT
CCTGTCCTTGTTGA

Translation (237 aa):
MAQPILGHGSLQPASAAGLASLELDSSMDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIG
VDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAV
PPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLY
RDAERQQGKVQKLEFSQEANGKASCPC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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