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Report for CCDS21012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21012.1 Public Mus musculus 7 Rab4b 23 108 98 CCDS HistoryNCBI Gene:19342Re-query CCDS DB by CCDS ID:21012.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093040.12 ENSMUSP00000090727.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093040.12Link to Ensembl Protein Viewer:ENSMUSP00000090727.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093040Re-query CCDS DB by Protein ID:ENSMUSP00000090727
Original member Current member NCBI NM_029391.2 NP_083667.1 Accepted alive Link to Nucleotide Sequence:NM_029391.2Link to Protein Sequence:NP_083667.1Re-query CCDS DB by Nucleotide ID:NM_029391Re-query CCDS DB by Protein ID:NP_083667Link to BLAST:NP_083667.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083667.1 213 Q91ZR1 213 100% 0 0

Chromosomal Locations for CCDS 21012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27172652 27172767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27172864 27172959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27174422 27174576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27174716 27174778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27175779 27175893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27176158 27176238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27178727 27178742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCCGAGACCTACGACTTCCTCTTCAAATTCCTGGTGATTGGCAGTGCTGGAACTGGCAAATCATGTC
TTCTCCACCAGTTTATTGAGAATAAGTTCAAACAGGACTCCAACCACACTATCGGCGTGGAGTTTGGATC
CAGGGTGGTCAACGTTGGGGGGAAGACTGTGAAACTACAGATTTGGGACACTGCTGGCCAGGAGCGGTTT
CGGTCGGTGACGCGGAGTTATTACCGAGGGGCAGCTGGAGCCCTGCTGGTGTATGACATCACCAGCCGGG
AGACATACAACTCACTCGCTGCTTGGCTAACTGATGCCCGGACACTGGCCAGCCCCAACATCGTGGTCAT
CCTCTGTGGCAACAAGAAGGACCTGGATCCCGAGCGTGAGGTCACTTTCCTAGAGGCTTCTCGCTTTGCT
CAGGAGAATGAGCTGATGTTCCTGGAGACCAGCGCTCTCACGGGTGAGAATGTGGAAGAAGCTTTCCTCA
AGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGATGGGTTCAGGCAT
TCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTCGCAGCGCCCAAGCCGTGGCCCCTCAGCCC
TGTGGCTGCTGA

Translation (213 aa):
MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF
RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFA
QENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDISLRQLRQPRSAQAVAPQP
CGC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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