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Report for CCDS33624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33624.1 Public Homo sapiens 22 LHFPL7 24 110 108 CCDS HistoryNCBI Gene:255349Re-query CCDS DB by CCDS ID:33624.1Re-query CCDS DB by GeneID:255349See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407886.1 ENSP00000385494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407886.1Link to Ensembl Protein Viewer:ENSP00000385494.1Re-query CCDS DB by Nucleotide ID:ENST00000407886Re-query CCDS DB by Protein ID:ENSP00000385494
Original member Current member NCBI NM_001001663.4 NP_001001663.1 Accepted alive Link to Nucleotide Sequence:NM_001001663.4Link to Protein Sequence:NP_001001663.1Re-query CCDS DB by Nucleotide ID:NM_001001663Re-query CCDS DB by Protein ID:NP_001001663Link to BLAST:NP_001001663.1

Chromosomal Locations for CCDS 33624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 24935333 24935595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24938149 24938275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGCTCCTCGGAGGCTGGCTCCTGTTGGCCTTCAATGCAATTTTCCTCCTGTCTTGGGCTGTGGCCCCCA
AAGGGCTGTGCCCAAGGAGAAGCAGTGTTCCAATGCCAGGGGTGCAGGCAGTGGCAGCTACTGCCATGAT
TGTGGGTCTGCTGATTTTCCCAATCGGCCTTGCCTCCCCATTCATCAAGGAAGTGTGCGAAGCCTCCTCC
ATGTATTATGGTGGGAAGTGCCGGCTGGGTTGGGGTTACATGACTGCTATCCTCAATGCAGTCCTGGCCA
GCCTCCTGCCCATCATCAGCTGGCCCCACACAACCAAGGTCCAAGGGAGGACCATCATCTTCTCCAGTGC
CACCGAGAGAATCATCTTTGTGCCAGAAATGAACAAATAA

Translation (129 aa):
MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASPFIKEVCEASS
MYYGGKCRLGWGYMTAILNAVLASLLPIISWPHTTKVQGRTIIFSSATERIIFVPEMNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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