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Report for CCDS18766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18766.1 Public Mus musculus 4 Catsper4 23 108 98 CCDS HistoryNCBI Gene:329954Re-query CCDS DB by CCDS ID:18766.1Re-query CCDS DB by GeneID:329954See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055892.9 ENSMUSP00000051694.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055892.9Link to Ensembl Protein Viewer:ENSMUSP00000051694.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055892Re-query CCDS DB by Protein ID:ENSMUSP00000051694
Original member Current member NCBI NM_177866.4 NP_808534.1 Accepted alive Link to Nucleotide Sequence:NM_177866.4Link to Protein Sequence:NP_808534.1Re-query CCDS DB by Nucleotide ID:NM_177866Re-query CCDS DB by Protein ID:NP_808534Link to BLAST:NP_808534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808534.1 442 Q8BVN3 442 100% 0 0

Chromosomal Locations for CCDS 18766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134212320 134212370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134213207 134213360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134213662 134213870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134215144 134215318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134217806 134217939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134218141 134218261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134218409 134218506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134221520 134221621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134226562 134226705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134227108 134227182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134227272 134227337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGTCTGAAAAACACAAGTGGTGGCAGCAGGTGGAGAACATCGACATCACACACCTGGGCCCTAAGAGAA
AAGCCTATGAACTCCTGGGTCGGCATGAGGAGCAAGTGCTCATCAACCGCAGAGATGTCATGGAGAAGAA
GGATGCCTGGGATGTACAGGAATTCATCACTCAAATGTATATCAAGCAGTTGCTCCGCCATCCGGCCTTC
CAGCTGCTGCTGGCCTTTCTGCTGCTGTCCAACGCTATCACCATTGCCCTTCGCACCAACTCTTATCTCG
GTCAGAAACATTACGAGCTATTCTCGACCATAGATGACATTGTGTTGACGATCCTTATCTGCGAGGTTCT
GCTTGGTTGGCTTAACGGCTTCTGGATTTTCTGGAAGGATGGCTGGAATATCCTCAACTTCGCAATTGTC
TTTATCTTGTTTATGGGGTTCTTCATAAAACAACTTGACATGGTTGCCATCACCTACCCTCTCAGGGTGC
TCCGGCTGGTGCATGTGTGTATGGCGGTGGAACCCCTGGCCAGAATCATCAAGGTTATCCTGCAGTCGAT
GCCAGACTTGGCTAATGTCATGGCTCTCATCCTCTTCTTCATGCTGGTATTCTCTGTGTTTGGGGTCACG
CTCTTCGGTGCATTTGTGCCCAAGCATTTCCAGAACATGGGGGTTGCCCTGTACACGCTCTTCATCTGCA
TCACTCAGGATGGATGGCTGGACATCTACACTGACTTCCAGATGGATGAAAGAGAGTACGCGATGGAGGT
CGGGGGCGCCATCTACTTTGCCGTCTTTATCACCCTCGGTGCCTTCATTGGTCTCAACTTGTTCGTCGTC
GTGGTGACCACAAACCTGGAACAAATGATGAAGACCGGCGAGGAAGAGGGACACCTGAACATAAAGTTTA
CTGAGACAGAAGAGGATGAGGACTGGACCGACGAGCTGCCACTGGTGCATTGTACAGAGGCCCGCAAGGA
TACTTCCACTGTCCCCAAGGAACCACTGGTTGGGGGCCCCCTGAGTAACCTCACAGAAAAGACCTGCGAT
AACTTCTGCTTGGTGCTTGAAGCAATACAGGAGAACTTGATGGAGTACAAAGAGATCCGAGAGGAACTCA
ACATGATCGTGGAGGAAGTGTCCTCCATCCGGTTCAACCAGGAGCAGCAAAATGTGATCCTACACAAGTA
TACCTCCAAAAGCGCCACCTTCCTAAGCGAGCCCCCAGAAGGGGCTAACAAGCAAGACTTGATCACTGCG
CTGGTCAGCAGGGAAAAGGTGTCTGATTCTAACATAAACATGGTTAACAAACACAAGTTCAGCCACTGA

Translation (442 aa):
MSEKHKWWQQVENIDITHLGPKRKAYELLGRHEEQVLINRRDVMEKKDAWDVQEFITQMYIKQLLRHPAF
QLLLAFLLLSNAITIALRTNSYLGQKHYELFSTIDDIVLTILICEVLLGWLNGFWIFWKDGWNILNFAIV
FILFMGFFIKQLDMVAITYPLRVLRLVHVCMAVEPLARIIKVILQSMPDLANVMALILFFMLVFSVFGVT
LFGAFVPKHFQNMGVALYTLFICITQDGWLDIYTDFQMDEREYAMEVGGAIYFAVFITLGAFIGLNLFVV
VVTTNLEQMMKTGEEEGHLNIKFTETEEDEDWTDELPLVHCTEARKDTSTVPKEPLVGGPLSNLTEKTCD
NFCLVLEAIQENLMEYKEIREELNMIVEEVSSIRFNQEQQNVILHKYTSKSATFLSEPPEGANKQDLITA
LVSREKVSDSNINMVNKHKFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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