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Report for CCDS44164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44164.1 Public Homo sapiens 1 SLC44A5 24 110 108 CCDS HistoryNCBI Gene:204962Re-query CCDS DB by CCDS ID:44164.1Re-query CCDS DB by GeneID:204962See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370859.8 ENSP00000359896.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370859.8Link to Ensembl Protein Viewer:ENSP00000359896.3Re-query CCDS DB by Nucleotide ID:ENST00000370859Re-query CCDS DB by Protein ID:ENSP00000359896
Original member Current member NCBI NM_001130058.2 NP_001123530.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130058.2Link to Protein Sequence:NP_001123530.1Re-query CCDS DB by Nucleotide ID:NM_001130058Re-query CCDS DB by Protein ID:NP_001123530Link to BLAST:NP_001123530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123530.1 717 Q8NCS7-4 717 100% 0 0

Chromosomal Locations for CCDS 44164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75203727 75203833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75211468 75211552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75213705 75213793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75213919 75213989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75214605 75214678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75215754 75215857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75217866 75217960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75218490 75218752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75219257 75219344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75219800 75219892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75222361 75222460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75227726 75227857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75233986 75234098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75236987 75237070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75238513 75238636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75242001 75242061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75242886 75243011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75251210 75251294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75274958 75275042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75300612 75300685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75339582 75339630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75396583 75396621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75541435 75541447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGAATGACACAGAAAAACCAGCAGATACTCCCTCTGAGGAAGAGGACTTTGGTGATCCAAGGACATATG
ACCCAGATTTCAAGGGGCCTGTTGCCAACAGGAGTTGTACAGATGTTCTGTGCTGTATGATCTTCCTACT
GTGTATTATTGGCTACATTGTTTTAGGACTTGTGGCCTGGGTACATGGGGACCCCAGAAGAGCAGCCTAT
CCTACAGACAGCCAGGGCCACTTTTGTGGCCAGAAGGGCACTCCCAATGAGAACAAGACCATTTTGTTTT
ACTTTAACCTGTTACGCTGTACCAGTCCCTCCGTGTTGCTAAACCTACAGTGCCCTACCACACAGATCTG
TGTCTCCAAGTGCCCAGAAAAATTTTTAACCTATGTGGAAATGCAACTTTTGTACACAAAAGACAAAAGC
TACTGGGAAGACTACCGTCAGTTCTGTAAGACCACTGCTAAGCCTGTGAAGTCTCTCACACAGCTTTTAC
TGGATGATGATTGTCCAACAGCGATTTTTCCCAGCAAACCTTTTCTCCAGAGATGTTTCCCTGACTTCTC
TACCAAAAATGGCACTTTAACAATAGGAAGTAAGATGATGTTTCAAGATGGAAATGGAGGGACAAGAAGT
GTTGTAGAACTCGGGATTGCTGCAAATGGTATCAATAAACTTCTTGATGCAAAGTCACTTGGATTGAAAG
TGTTTGAAGACTATGCAAGAACTTGGTATTGGATTCTCATTGGCCTGACGATTGCCATGGTCCTTAGTTG
GATATTTTTGATACTTCTGAGGTTCATAGCTGGATGCCTCTTCTGGGTCTTCATGATTGGTGTGATTGGA
ATTATAGGTTATGGAATATGGCACTGTTACCAGCAGTACACCAATCTTCAGGAACGCCCAAGTTCTGTAT
TAACTATCTATGACATCGGGATTCAGACTAACATAAGCATGTACTTTGAACTGCAACAAACATGGTTCAC
ATTTATGATAATACTCTGCATCATTGAAGTGATTGTCATCCTCATGCTGATCTTCCTCAGGAATCGAATC
CGAGTCGCCATTATCCTGCTGAAGGAAGGAAGCAAAGCCATTGGATATGTTCCTAGTACATTAGTCTATC
CAGCTTTAACTTTCATTTTGCTCTCAATCTGCATTTGCTACTGGGTCGTGACAGCAGTTTTCTTGGCGAC
ATCGGGGGTACCTGTATACAAAGTCATAGCTCCAGGGGGGCATTGTATACATGAAAATCAAACCTGTGAC
CCAGAGATTTTTAATACAACTGAAATTGCCAAAGCTTGCCCTGGGGCTCTGTGTAACTTTGCTTTCTATG
GTGGAAAGAGCTTGTACCATCAGTACATCCCTACCTTCCATGTATACAACTTATTTGTCTTTCTCTGGCT
TATAAACTTCGTCATTGCATTAGGTCAGTGCGCCCTTGCTGGTGCATTCGCTACTTATTACTGGGCCATG
AAAAAACCTGATGACATCCCACGATATCCACTTTTTACTGCATTTGGACGAGCCATACGATATCACACAG
GATCCCTAGCATTTGGATCTTTAATTATTGCATTAATTCAAATGTTTAAAATTGTACTAGAATACTTGGA
CCACCGTCTTAAACGTACCCAGAACACATTGTCTAAATTCCTACAATGCTGCCTGAGATGCTGCTTCTGG
TGTTTGGAAAATGCAATAAAGTTTTTAAACAGAAATGCCTATATTATGATTGCAATATATGGCAGAAACT
TCTGCAGGTCAGCAAAAGATGCTTTCAATCTGCTGATGAGAAATGTTTTGAAAGTTGCAGTTACAGATGA
AGTTACATACTTTGTATTATTCCTGGGGAAACTTCTAGTTGCTGGAAGTATAGGTGTTCTGGCCTTCCTA
TTCTTCACACAAAGACTGCCAGTGATTGCACAAGGACCAGCATCTTTAAATTACTACTGGGTACCTTTGC
TGACAGTCATTTTTGGGTCTTACCTGATTGCACATGGGTTCTTCAGCGTCTATGCAATGTGTGTTGAAAC
AATTTTCATCTGCTTCTTGGAAGATTTAGAAAGAAATGATGGTTCTACTGCAAGACCTTATTATGTGAGT
CAACCTTTGCTGAAGATTTTCCAGGAGGAAAATCCACAAACTAGGAAGCAGTAG

Translation (717 aa):
MNDTEKPADTPSEEEDFGDPRTYDPDFKGPVANRSCTDVLCCMIFLLCIIGYIVLGLVAWVHGDPRRAAY
PTDSQGHFCGQKGTPNENKTILFYFNLLRCTSPSVLLNLQCPTTQICVSKCPEKFLTYVEMQLLYTKDKS
YWEDYRQFCKTTAKPVKSLTQLLLDDDCPTAIFPSKPFLQRCFPDFSTKNGTLTIGSKMMFQDGNGGTRS
VVELGIAANGINKLLDAKSLGLKVFEDYARTWYWILIGLTIAMVLSWIFLILLRFIAGCLFWVFMIGVIG
IIGYGIWHCYQQYTNLQERPSSVLTIYDIGIQTNISMYFELQQTWFTFMIILCIIEVIVILMLIFLRNRI
RVAIILLKEGSKAIGYVPSTLVYPALTFILLSICICYWVVTAVFLATSGVPVYKVIAPGGHCIHENQTCD
PEIFNTTEIAKACPGALCNFAFYGGKSLYHQYIPTFHVYNLFVFLWLINFVIALGQCALAGAFATYYWAM
KKPDDIPRYPLFTAFGRAIRYHTGSLAFGSLIIALIQMFKIVLEYLDHRLKRTQNTLSKFLQCCLRCCFW
CLENAIKFLNRNAYIMIAIYGRNFCRSAKDAFNLLMRNVLKVAVTDEVTYFVLFLGKLLVAGSIGVLAFL
FFTQRLPVIAQGPASLNYYWVPLLTVIFGSYLIAHGFFSVYAMCVETIFICFLEDLERNDGSTARPYYVS
QPLLKIFQEENPQTRKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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