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Report for CCDS28068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28068.1 Public Mus musculus 16 Dgkg 23 108 98 CCDS HistoryNCBI Gene:110197Re-query CCDS DB by CCDS ID:28068.1Re-query CCDS DB by GeneID:110197See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089925.9 ENSMUSP00000087371.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089925.9Link to Ensembl Protein Viewer:ENSMUSP00000087371.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089925Re-query CCDS DB by Protein ID:ENSMUSP00000087371
Original member Current member NCBI NM_138650.2 NP_619591.1 Accepted alive Link to Nucleotide Sequence:NM_138650.2Link to Protein Sequence:NP_619591.1Re-query CCDS DB by Nucleotide ID:NM_138650Re-query CCDS DB by Protein ID:NP_619591Link to BLAST:NP_619591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619591.1 788 Q91WG7 788 100% 0 0

Chromosomal Locations for CCDS 28068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22469249 22469347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22479366 22479426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22481901 22482021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22500224 22500401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22519545 22519635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22548652 22548716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22556326 22556486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22558017 22558106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22562698 22562783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22565287 22565361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22566415 22566494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22570163 22570222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22571671 22571763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22572600 22572716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22575312 22575400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22576687 22576804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22579743 22579865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22580523 22580597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22584435 22584484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22588299 22588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22599834 22599887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22600439 22600604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22610779 22610855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22622195 22622261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGAGCGAAGAACAATGGGTCTCTCTCTCATCAGAAGAATTTGATCAACTCCAGAAATACTCTGAATATT
CCTCCAAAAAGATAAAAGATGTATTGGCTGAGTTTAATGAAGGTGGAAGCCTCAGGCAGTATGACCCACA
CAAGCCCATTAGCTATGATGTCTTCAAGCTGTTCATGAGGGCATACCTGGAGGTGGACCTTCCTCAGCCA
CTGAGCACACACCTCTTCCTGGCCTTCAGCCAGAAGCCCAGACAAGAGACACCTGACCATCCAAAGGAGG
GGGCCAGCAGTAGTGAGCCCAATGTCTCAGATTATAATTCGGATAATGCTGCCAAAGCAGATGAGGCCTG
TGCTCCAGACACTGAATCAAAAACAACTAAGACACAAGCACCATCTAAAGAACTAGAGGCTGCAGCCCCA
TGGGAAGACCCAGGTGCTCTGGCTTCAAGCTCAGATGCTCCCGTAGTGTACCTGAAGGATGTCGTGTGTT
ACTTGTCCCTGATGGAGACCGGGCGACCTCAGGATAAGCTAGAATTCATGTTTCGTCTCTATGATTCGGA
TGAAAATGGACTCCTGGACCAAGCGGAGATGGATCAGATTGTGAGCCAAATGCTGCACGTTGCCCAGTAC
CTGGAATGGGATCCCACAGAGCTCAGACCTATACTGAAGGAGATGCTGCAAGGCATGGACTATGACAAGG
ATGGCTTCGTGTCTCTACAGGAGTGGATCAACGGGGGAATGACCACCATCCCTTTGCTGGTCCTCCTGGG
AATGGATGACTCTGGCTCCAAGGGCGATGGGAGGCATGCCTGGACCCTGAAGCACTTCAAGAAGCCCACT
TACTGCAACTTCTGCCGCGCCATGCTGATGGGTGTTGGGAAGCAAGGCCTGTGCTGCATCTACTGTAAAT
ATACAGTCCACCAACGCTGTGTATCCAAAACCATTCATGGATGTGTGAAAACAAACTCCAAAGCCAAAAG
GAGTGGCGAGGTGATGCAGCATGCGTGGGTGGAAGGGAACTCCTCCGTCAAGTGTGACCGGTGCCACAAA
AGTATCAAGTGCTACCAGAGTGTCACCGCGCGGCACTGCGTGTGGTGCCGGATGACGTTTCACCGCAAAT
GTGAATTATCGACAGTGTGCGACGGTGGGGAACTCAAAGACCACATTTTGCTGCCTACCTCCATATGCCC
CGTCTCCGGAGACCGGCAAGGAGGGAAGTCCGATGGCAGTGTGGCCGCCAAGGGTGAACTTGTAACTCAG
TATAAGATCATCCCTAGCCCGGGGACGCATCCCCTGCTGGTCCTGGTGAACCCCAAGAGTGGAGGAAGAC
AAGGAGAAAGAATTCTTCGGAAATTTCACTACCTGCTCAACCCCGAACAAGTTTTCAACCTGGACAATGG
GGGACCTACACCAGGATTGAACTTCTTTCATGATACCCCAGACTTCCGTGTTCTTGCCTGTGGCGGAGAT
GGGACCGTTGGCTGGATTTTGGATTGCATTGATAAGGCTAACTTCACAAAGCACCCACCGGTGGCTGTCC
TGCCTCTTGGAACAGGGAATGACCTCGCACGATGCCTCCGCTGGGGAGGAGGTTACGAAGGGGGCAGCTT
GACCAAAATCCTGAAGGAAATTGAACAGAGCCCCTTGGTGATGCTGGACCGTTGGTACCTAGAGGTCATG
CCCAGGGAAGAGGTGGAGAATGGAGACCAAGTCCCATACAACATCATGAACAACTATTTCTCCATTGGTG
TGGATGCTTCAATTGCACACAGATTCCATATGATGAGAGAGAAACACCCTGAAAAATTCAACAGCAGGAT
GAAGAACAAGCTGTGGTATTTCGAATTTGGTACCTCGGAAACCTTTGCAGCCACCTGCAAGAAACTCCAT
GACCACATAGAGCTGGAGTGTGACGGAGTTGAGGTGGATCTGAGCAACATCTTCCTGGAAGGCATCGCCA
TTCTTAATATTCCCAGCATGTACGGAGGCACCAATCTCTGGGGAGAAACCAAGAAGAACCGGGCTGTGAT
CCGGGAAAGCAGGAAGAGCGTCACAGACCCAAAGGAGCTGAAATGCTGTGTCCAAGACCTCAGCGATCAG
CTCCTTGAAGTGGTGGGTCTAGAGGGAGCCATGGAGATGGGACAGATCTACACTGGCCTGAAGAGTGCGG
GCAGGAGACTGGCCCAGTGCTCCTCTGTCACCATTAGGACTAACAAGCTTCTGCCGATGCAAGTAGACGG
AGAGCCCTGGATGCAGCCACAATGCACGATTAAAATCACTCACAAAAACCAGGCACCTATGATGATGGGG
CCTCCCCAGAAGAGCAGCTTTTTTTCTCTGAGGAGGAAAAGCCGTTCAAAAGACTAA

Translation (788 aa):
MSEEQWVSLSSEEFDQLQKYSEYSSKKIKDVLAEFNEGGSLRQYDPHKPISYDVFKLFMRAYLEVDLPQP
LSTHLFLAFSQKPRQETPDHPKEGASSSEPNVSDYNSDNAAKADEACAPDTESKTTKTQAPSKELEAAAP
WEDPGALASSSDAPVVYLKDVVCYLSLMETGRPQDKLEFMFRLYDSDENGLLDQAEMDQIVSQMLHVAQY
LEWDPTELRPILKEMLQGMDYDKDGFVSLQEWINGGMTTIPLLVLLGMDDSGSKGDGRHAWTLKHFKKPT
YCNFCRAMLMGVGKQGLCCIYCKYTVHQRCVSKTIHGCVKTNSKAKRSGEVMQHAWVEGNSSVKCDRCHK
SIKCYQSVTARHCVWCRMTFHRKCELSTVCDGGELKDHILLPTSICPVSGDRQGGKSDGSVAAKGELVTQ
YKIIPSPGTHPLLVLVNPKSGGRQGERILRKFHYLLNPEQVFNLDNGGPTPGLNFFHDTPDFRVLACGGD
GTVGWILDCIDKANFTKHPPVAVLPLGTGNDLARCLRWGGGYEGGSLTKILKEIEQSPLVMLDRWYLEVM
PREEVENGDQVPYNIMNNYFSIGVDASIAHRFHMMREKHPEKFNSRMKNKLWYFEFGTSETFAATCKKLH
DHIELECDGVEVDLSNIFLEGIAILNIPSMYGGTNLWGETKKNRAVIRESRKSVTDPKELKCCVQDLSDQ
LLEVVGLEGAMEMGQIYTGLKSAGRRLAQCSSVTIRTNKLLPMQVDGEPWMQPQCTIKITHKNQAPMMMG
PPQKSSFFSLRRKSRSKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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