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Report for CCDS30073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30073.1 Public Mus musculus X Gm9 23 108 98 CCDS HistoryNCBI Gene:194854Re-query CCDS DB by CCDS ID:30073.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101636.2 ENSMUSP00000099160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101636.2Link to Ensembl Protein Viewer:ENSMUSP00000099160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101636Re-query CCDS DB by Protein ID:ENSMUSP00000099160
Original member Current member NCBI NM_001033234.2 NP_001028406.1 Accepted alive Link to Nucleotide Sequence:NM_001033234.2Link to Protein Sequence:NP_001028406.1Re-query CCDS DB by Nucleotide ID:NM_001033234Re-query CCDS DB by Protein ID:NP_001028406Link to BLAST:NP_001028406.1

Chromosomal Locations for CCDS 30073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37209927 37210020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37210260 37210572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37210818 37210899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGGACCATCCCCGCAAGTTTGAACACCAGGACATCAGCTACCAGAGCCTCGGAATTGATGTGTCTTCGG
AAAGAGCTAAAGAAGTGATGCCACCTATGATCAATGTTGAGGGAGGAAATGATGGTGGTGACCAATTTTG
GCCTAAATCTGACTTGGGAAGAGCGACAGGAGAAGACAGTAGTTTTGTGGGTACAGGAGCGCCCGGAGCC
AAAAACGAAGGCAAACACAAGGGCTATGGTGACCAGGACCAGCCAACTCTACCTGCAGAAACCAGGACCC
AGCATTTGCAGGACGATGCTGACATAAGCATGATCTGTAGAGCCTTCAGCCAGCTGAAACTTGAAGATCT
GGACCACGTGTTCCAATGCACTCAGTTCCCCAACATCTTTGTGAGAAACGAAGTTGGAATGCCCACAAGT
GTTGAACCCGAAGCTGAATCCGTTGGGCACAGTGAACCGGAAGAGGAGCTGCTCAAGCAGTCATTCTAA

Translation (162 aa):
MDHPRKFEHQDISYQSLGIDVSSERAKEVMPPMINVEGGNDGGDQFWPKSDLGRATGEDSSFVGTGAPGA
KNEGKHKGYGDQDQPTLPAETRTQHLQDDADISMICRAFSQLKLEDLDHVFQCTQFPNIFVRNEVGMPTS
VEPEAESVGHSEPEEELLKQSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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