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Report for CCDS28704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28704.1 Public Mus musculus 17 Ier3 23 108 98 CCDS HistoryNCBI Gene:15937Re-query CCDS DB by CCDS ID:28704.1Re-query CCDS DB by GeneID:15937See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003635.6 ENSMUSP00000003635.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003635.6Link to Ensembl Protein Viewer:ENSMUSP00000003635.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003635Re-query CCDS DB by Protein ID:ENSMUSP00000003635
Original member Current member NCBI NM_133662.2 NP_598423.1 Accepted alive Link to Nucleotide Sequence:NM_133662.2Link to Protein Sequence:NP_598423.1Re-query CCDS DB by Nucleotide ID:NM_133662Re-query CCDS DB by Protein ID:NP_598423Link to BLAST:NP_598423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598423.1 160 P46694 160 100% 0 0

Chromosomal Locations for CCDS 28704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35821719 35821928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35822038 35822310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGTGCCACTCGCGCAACCATCTCCACACCATGACTGGCCTGAGGGCCCCTTCTCCAGCTCCCTCCACCG
GCCCGGAACTCCGGCGGGGCTCTGGTCCCGAAATTTTCACCTTCGACCCTCTCCCGGAGCGGGCCGTGGT
GTCCACCGCGCGTTTGAACACTTCTCGCGGGCACCGAAAACGCAGCCGAAGGGTGCTCTACCCTCGAGTG
GTCCGGCGCCAGCTACCAACCGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTCTCCTGTTCGCCATCA
TCTTCTGCCAGATTTTGATGGCTGAAGAGGGTGTGTCGCAGCCCCTGGCTCCGGAGGATGCTACCAGCGC
CGTGACACCTGAGCCCATTTCTGCGCCCATTACTGCGCCCCCGGTCCTCGAGCCTTTGAACCTGACCTCG
GAGTCCTCGGACTATGCGCTGGATCTTAAAGCTTTTCTCCAGCAACATCCGGCGGCCTTCTAA

Translation (160 aa):
MCHSRNHLHTMTGLRAPSPAPSTGPELRRGSGPEIFTFDPLPERAVVSTARLNTSRGHRKRSRRVLYPRV
VRRQLPTEEPNIAKRVLFLLFAIIFCQILMAEEGVSQPLAPEDATSAVTPEPISAPITAPPVLEPLNLTS
ESSDYALDLKAFLQQHPAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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