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Report for CCDS20958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20958.1 Public Mus musculus 7 Lypd3 23 108 98 CCDS HistoryNCBI Gene:72434Re-query CCDS DB by CCDS ID:20958.1Re-query CCDS DB by GeneID:72434See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080718.5 ENSMUSP00000079543.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080718.5Link to Ensembl Protein Viewer:ENSMUSP00000079543.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080718Re-query CCDS DB by Protein ID:ENSMUSP00000079543
Original member Current member NCBI NM_133743.1 NP_598504.1 Accepted alive Link to Nucleotide Sequence:NM_133743.1Link to Protein Sequence:NP_598504.1Re-query CCDS DB by Nucleotide ID:NM_133743Re-query CCDS DB by Protein ID:NP_598504Link to BLAST:NP_598504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598504.1 363 Q91YK8 363 100% 0 0

Chromosomal Locations for CCDS 20958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24636590 24636674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24637125 24637256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24638428 24638598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24638914 24639075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24640060 24640601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGATGCCGCCAGGAGAGGAGATACACAGCCAGTGATGTGGACCACCGGATGGCTGTTGCTGCTGCCGC
TTCTGCTGTGTGAAGGAGCGCAAGCCCTGGAGTGCTACAGCTGCGTGCAGAAGGCGGACGATGGATGCTC
TCCGCACAGGATGAAGACAGTCAAATGTGGTCCCGGGGTGGACGTCTGTACCGAGGCCGTGGGAGCGGTA
GAGACCATCCACGGGCAATTCTCTGTGGCGGTGCGGGGCTGCGGTTCCGGAATCCCGGGCAAGAACGACC
GCGGACTGGACCTTCACGGGCTCCTGGCCTTCTTTCAGCTACAGCAGTGCTCCGAGGACCGATGCAACGC
CAAACTCAACCTCACTTTGCGAGGCCTCAACCCTGCAGGCAATGAGAGTGCATATGAGCCTAACGGTGCA
GAGTGCTACAGCTGTGTGGGTCTGAGCCGCGAGAAGTGCCAGGGCTCCATGCCGCCGGTCGTGAACTGCT
ACAACGCCAGTGGCCGTGTCTACAAGGGCTGCTTCGATGGTAACGTCACCCTGACGGCAGCCAACGTGAC
CGTGTCCTTACCTGTCCGAGGCTGCGTCCAGGACGAGACCTGCACCCGGGATGGGGTGACGGGTCCAGGA
TTCACACTCAGCGGCTCTTGCTGTCAGGGCCCCCGCTGTAACGCCGACCTTCGCAACAAGACCTATTTCT
CCCCTCGAATCCCACCCCTAGTCCTGCTGCCCCCTCCAACCACCGCAGCCCCATCCACTCGGGCCCAGAA
CTCCTCCAGCACGACCTCTACAGCAGCCCCAACCACGACCACCTCCATCATCAAGCCCACCACAGCCCAA
GCCAGCCACACTTCTCCCCATGAAATGGATCTCGAAGTCATACAGGAAGAGGGGGCGTCGTTGAGTGGAG
GTGCTGCGGGCCATGGAGGTACTGCGGGCCATGGAGGTGCTGCGGGCCACCAAGACCGCAGCAATATGGA
GAAGTATCCAGGAAAGGGTGGGGCCCAGATCCCAGCTAAAGGAGGCTCTGGCACTCTAGGGTCCTGGTTG
TCTGCAGTTCTGTTGACTGTGGTTGCTGGCGCGATGCTGTGA

Translation (363 aa):
MDAARRGDTQPVMWTTGWLLLLPLLLCEGAQALECYSCVQKADDGCSPHRMKTVKCGPGVDVCTEAVGAV
ETIHGQFSVAVRGCGSGIPGKNDRGLDLHGLLAFFQLQQCSEDRCNAKLNLTLRGLNPAGNESAYEPNGA
ECYSCVGLSREKCQGSMPPVVNCYNASGRVYKGCFDGNVTLTAANVTVSLPVRGCVQDETCTRDGVTGPG
FTLSGSCCQGPRCNADLRNKTYFSPRIPPLVLLPPPTTAAPSTRAQNSSSTTSTAAPTTTTSIIKPTTAQ
ASHTSPHEMDLEVIQEEGASLSGGAAGHGGTAGHGGAAGHQDRSNMEKYPGKGGAQIPAKGGSGTLGSWL
SAVLLTVVAGAML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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