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Report for CCDS48161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48161.1 Public Homo sapiens X CT47B1 24 110 108 CCDS HistoryNCBI Gene:643311Re-query CCDS DB by CCDS ID:48161.1Re-query CCDS DB by GeneID:643311See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 48161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371311.5 ENSP00000360360.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371311.5Link to Ensembl Protein Viewer:ENSP00000360360.3Re-query CCDS DB by Nucleotide ID:ENST00000371311Re-query CCDS DB by Protein ID:ENSP00000360360
Original member Current member NCBI NM_001145718.3 NP_001139190.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145718.3Link to Protein Sequence:NP_001139190.1Re-query CCDS DB by Nucleotide ID:NM_001145718Re-query CCDS DB by Protein ID:NP_001139190Link to BLAST:NP_001139190.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139190.1 299 P0C2W7 299 100% 0 0

Chromosomal Locations for CCDS 48161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120873896 120874020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120874896 120875670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCAGGAGGCCCCGGTAAGCCAGGAGGGAGCAC
AGGCCGAGGCGGCCGGAGCTGGTAACCAGGAGGGCGGCGACTCCGGCCCCGACAGCAGCGACATGGTGCC
TGCGGCCGAGGTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGAGGAGGGTGAGCAGGCGGCA
GGCCTGGCCGCAGTCCCCCAGGGCGGGAGCGCCGAGGAGGACTCAGATATCGGGCCCGCGACGGAGGAAG
AGGAGGAGGAGGAAGAGGGGAACGAGGCGGCCAACTTCGACTTGGCGGTGGCCACCCGTCGGTACCCGGC
GGCGGGCATTGGCTTCGTGTTCCTGTACCTGGTCCACTCCCTTCTCCGCCGCCTCTATCACAACGACCAC
ATCCAGATAGCGAACCGTCACCTCAGCCGCCTGATGGTGGGGCCCCACGCTGCTGTGCCCAACCTCTGGG
ACAACCCTCCCCTGCTGCTGCTGTCCCAGAGGCTGGGTGCAGGGGCTGCAGCCCCAGAAGGCGAGGGCCT
CGGCCTGATCCAGGAGGCTGCGTCGGTCCAGGAGGCCGCGTCGGTCCCAGAGCCTGCAGTGCCAGCTGAC
CTGGCCGAGATGGCCAGGGAGCCCGCGGAGGAGGCCGCAGATGAGAAACCCCCAGAGGAGGCCGCAGAGG
AGAAGCTCACAGAGGAGGCCACAGAGGAACCGGCCGCAGAGGAACCGACCTCAGAGGAGGCCGTGGCCCC
CGAGGAAGTCACTAAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGCTGCAGGCGAGGAAGAG
AAAGAACAAGAAAAAGAGAAGGATGTGGAAAACAAGGTGAAGAACTCCAAAGGGACCTAG

Translation (299 aa):
MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDMVPAAEVVGVAGPVEGLGEEEGEQAA
GLAAVPQGGSAEEDSDIGPATEEEEEEEEGNEAANFDLAVATRRYPAAGIGFVFLYLVHSLLRRLYHNDH
IQIANRHLSRLMVGPHAAVPNLWDNPPLLLLSQRLGAGAAAPEGEGLGLIQEAASVQEAASVPEPAVPAD
LAEMAREPAEEAADEKPPEEAAEEKLTEEATEEPAAEEPTSEEAVAPEEVTKSQPEKWDEEAQDAAGEEE
KEQEKEKDVENKVKNSKGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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