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Report for CCDS23424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23424.1 Public Mus musculus 9 Rbp1 23 108 98 CCDS HistoryNCBI Gene:19659Re-query CCDS DB by CCDS ID:23424.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052068.10 ENSMUSP00000059749.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052068.10Link to Ensembl Protein Viewer:ENSMUSP00000059749.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000052068Re-query CCDS DB by Protein ID:ENSMUSP00000059749
Original member Current member NCBI NM_011254.5 NP_035384.1 Accepted alive Link to Nucleotide Sequence:NM_011254.5Link to Protein Sequence:NP_035384.1Re-query CCDS DB by Nucleotide ID:NM_011254Re-query CCDS DB by Protein ID:NP_035384Link to BLAST:NP_035384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035384.1 135 Q00915 135 100% 0 0

Chromosomal Locations for CCDS 23424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98424979 98425051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98425453 98425631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98444590 98444691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98446296 98446349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGCCTGTGGACTTCAACGGGTACTGGAAGATGCTGAGCAATGAGAATTTCGAGGAGTACCTGCGCGCGC
TCGACGTCAACGTGGCCTTACGCAAAATCGCCAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGATGG
CGACCACATGATCATCCGCACGCTGAGCACTTTTCGGAACTATATCATGGACTTCCAAGTTGGGAAGGAG
TTTGAGGAAGATCTGACAGGCATAGACGACCGCAAGTGCATGACCACTGTGAGCTGGGATGGTGACAAAC
TCCAGTGTGTGCAGAAGGGAGAGAAGGAGGGACGTGGCTGGACGCAGTGGATCGAGGGTGATGAACTTCA
CCTGGAAATGAGAGCTGAGGGTGTGATCTGCAAGCAAGTGTTTAAGAAAGTACACTGA

Translation (135 aa):
MPVDFNGYWKMLSNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKE
FEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEGVICKQVFKKVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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