NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93288.1 Public Homo sapiens 3 ITIH3 24 110 108 CCDS HistoryNCBI Gene:3699Re-query CCDS DB by CCDS ID:93288.1Re-query CCDS DB by GeneID:3699See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000703834.1 ENSP00000515492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703834.1Link to Ensembl Protein Viewer:ENSP00000515492.1Re-query CCDS DB by Nucleotide ID:ENST00000703834Re-query CCDS DB by Protein ID:ENSP00000515492
Original member Current member NCBI NM_001392019.1 NP_001378948.1 Accepted alive Link to Nucleotide Sequence:NM_001392019.1Link to Protein Sequence:NP_001378948.1Re-query CCDS DB by Nucleotide ID:NM_001392019Re-query CCDS DB by Protein ID:NP_001378948Link to BLAST:NP_001378948.1

Chromosomal Locations for CCDS 93288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52794804 52794896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52795603 52795623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52796481 52796647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52796739 52796843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52797105 52797267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52797817 52797930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52798966 52799091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52799372 52799488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52799753 52799921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52800538 52800663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52800965 52801146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52802334 52802519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52802667 52802806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52803855 52804009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52804726 52804734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52805262 52805372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52805808 52805840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52806103 52806138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52806293 52806406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52806901 52807105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52807747 52807916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52808110 52808221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52808552 52808681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGGCATTTGCATGGTGGCCCTGTCTCATCTTGGCTCTGCTCTCCAGCTTGGCAGCCTCTGGCTTCCCGA
GAAGCCCCTTTCGGCTGCTTGGGAAACGGAGCCTCCCGGAAGGGGTGGCCAATGGCATCGAGGTCTACAG
TACCAAAATCAACTCCAAGGTGACCTCCCGTTTTGCTCACAATGTTGTCACCATGAGAGCCGTCAACCGT
GCAGACACGGCCAAGGAGGTTTCCTTTGATGTGGAGCTGCCCAAGACGGCCTTCATCACCAACTTCACCT
TGACCATCGACGGTGTTACCTACCCTGGGAATGTCAAGGAGAAGGAAGTTGCCAAGAAGCAGTATGAAAA
GGCTGTGTCCCAGGGCAAGACGGCCGGCTTGGTCAAGGCCTCTGGGAGGAAGTTGGAGAAGTTCACAGTC
TCGGTCAACGTGGCTGCAGGCAGCAAAGTCACCTTCGAGCTAACCTACGAGGAGCTGCTGAAGAGGCACA
AGGGCAAGTACGAGATGTACCTCAAGGTCCAGCCTAAGCAACTGGTCAAACACTTTGAGATCGAGGTAGA
CATCTTCGAGCCTCAGGGAATCAGCATGCTGGATGCTGAGGCCTCTTTCATCACCAACGACCTCCTGGGA
AGCGCCCTCACCAAGTCCTTCTCAGGGAAAAAGGGCCATGTGTCCTTCAAGCCCAGCTTAGACCAACAGC
GTTCATGCCCAACCTGTACAGACTCCCTCCTCAATGGAGATTTCACTATCACCTATGACGTGAACAGAGA
ATCTCCTGGCAACGTGCAGATAGTCAATGGCTACTTCGTGCACTTCTTTGCACCTCAAGGCCTTCCAGTG
GTGCCTAAGAACGTGGCCTTTGTGATTGACATCAGCGGCTCCATGGCTGGTCGGAAATTAGAGCAGACAA
AGGAGGCCCTTCTCAGAATCCTGGAAGATATGCAAGAGGAAGACTATCTGAATTTCATCCTGTTCAGTGG
AGATGTGTCCACATGGAAAGAGCACTTAGTCCAGGCCACGCCCGAGAACCTCCAGGAGGCCAGGACGTTT
GTGAAGAGCATGGAGGATAAAGGAATGACCAACATCAATGACGGGCTGCTGAGGGGCATCAGTATGCTGA
ACAAGGCCCGAGAGGAGCACAGAATCCCAGAGAGGAGCACCTCCATTGTCATCATGCTGACTGATGGGGA
TGCCAATGTTGGTGAGAGCAGACCCGAAAAAATCCAAGAGAATGTGCGGAATGCCATCGGGGGCAAGTTC
CCCTTGTATAACCTGGGCTTTGGCAACAATCTGAATTATAACTTCCTGGAGAACATGGCCCTGGAGAACC
ATGGGTTTGCCCGGCGCATTTATGAGGACTCTGATGCCGATTTGCAGTTGCAGGGCTTCTATGAGGAGGT
GGCCAACCCACTGCTGACGGGTGTGGAGATGGAGTACCCCGAGAACGCTATCCTGGACCTCACCCAGAAC
ACTTACCAGCACTTCTACGATGGCTCTGAGATCGTGGTGGCCGGGCGCCTGGTGGACGAGGACATGAACA
GCTTTAAGGCAGATGTGAAGGGCCATGGGGCCACCAACGACCTGACCTTCACAGAGGAGGTGGACATGAA
GGAGATGGAGAAGGCCCTGCAGGAGCGGGACTACATCTTCGGGAATTACATTGAGCGGCTCTGGGCCTAC
CTCACCATTGAGCAGCTGCTGGAGAAGCGCAAGAACGCCCATGGCGAGGAGAAGGAGAACCTCACGGCCC
GGGCCCTGGACCTGTCCCTCAAGTATCACTTTGTGACTCCACTGACCTCAATGGTGGTGACCAAGCCTGA
GGACAACGAGGATGAGAGGGCCATTGCCGACAAGCCTGGGGAAGATGCAGAAGGCAGGGCCTCCCCAGCC
CCTACTGGCCTGCCCCACCTCCATTTGGACTGGCACATTTGGACTGGGCCATCACATTCCCCTCAGAACA
GCCCTGATAAATGTACCGGTGCATCCACACCGGTGAGCCCCGCCATGTCCTACCTGACCAGCTACCAGCC
TCCTCAAAACCCCTACTACTATGTGGACGGGGATCCCCACTTCATCATCCAAATTCCGGAGAAAGACGAT
GCCCTCTGCTTCAACATCGATGAAGCCCCAGGCACAGTGCTGCGCCTTATTCAGGATGCAGTCACAGGCC
TCACAGTTAATGGGCAGATCACTGGCGACAAGAGAGGCAGCCCTGACTCCAAGACCAGAAAGACTTACTT
TGGAAAACTGGGCATCGCCAATGCTCAGATGGACTTCCAGGTGGAGGTGACAACGGAGAAGATCACCCTG
TGGAACAGGGCCGTGCCGAGCACTTTCAGCTGGCTGGACACAGTCACAGTCACGCAGGATGGGCTGTCCA
TGATGATCAACAGGAAGAACATGGTGGTCTCCTTTGGAGATGGGGTTACCTTCGTGGTCGTCCTACACCA
GGTGTGGAAGAAACATCCTGTCCACCGTGACTTTCTAGGCTTCTACGTGGTGGACAGTCACCGGATGTCA
GCACAGACGCATGGGCTGCTGGGGCAATTCTTCCAACCCTTTGACTTTAAAGTGTCTGACATCCGGCCAG
GCTCTGACCCCACAAAGCCAGATGCCACATTGGTGGTGAAGAACCATCAGCTGATTGTCACCAGGGGCTC
CCAGAAAGACTACAGAAAGGATGCCAGCATCGGCACGAAGGTTGTCTGCTGGTTCGTCCACAACAACGGA
GAAGGGCTGATTGATGGTGTCCACACTGACTACATTGTCCCCAACCTGTTTTGA

Translation (927 aa):
MAFAWWPCLILALLSSLAASGFPRSPFRLLGKRSLPEGVANGIEVYSTKINSKVTSRFAHNVVTMRAVNR
ADTAKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTV
SVNVAAGSKVTFELTYEELLKRHKGKYEMYLKVQPKQLVKHFEIEVDIFEPQGISMLDAEASFITNDLLG
SALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLNGDFTITYDVNRESPGNVQIVNGYFVHFFAPQGLPV
VPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLNFILFSGDVSTWKEHLVQATPENLQEARTF
VKSMEDKGMTNINDGLLRGISMLNKAREEHRIPERSTSIVIMLTDGDANVGESRPEKIQENVRNAIGGKF
PLYNLGFGNNLNYNFLENMALENHGFARRIYEDSDADLQLQGFYEEVANPLLTGVEMEYPENAILDLTQN
TYQHFYDGSEIVVAGRLVDEDMNSFKADVKGHGATNDLTFTEEVDMKEMEKALQERDYIFGNYIERLWAY
LTIEQLLEKRKNAHGEEKENLTARALDLSLKYHFVTPLTSMVVTKPEDNEDERAIADKPGEDAEGRASPA
PTGLPHLHLDWHIWTGPSHSPQNSPDKCTGASTPVSPAMSYLTSYQPPQNPYYYVDGDPHFIIQIPEKDD
ALCFNIDEAPGTVLRLIQDAVTGLTVNGQITGDKRGSPDSKTRKTYFGKLGIANAQMDFQVEVTTEKITL
WNRAVPSTFSWLDTVTVTQDGLSMMINRKNMVVSFGDGVTFVVVLHQVWKKHPVHRDFLGFYVVDSHRMS
AQTHGLLGQFFQPFDFKVSDIRPGSDPTKPDATLVVKNHQLIVTRGSQKDYRKDASIGTKVVCWFVHNNG
EGLIDGVHTDYIVPNLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH