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Report for CCDS29053.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29053.2 Public Mus musculus 18 Rock1 23 108 98 CCDS HistoryNCBI Gene:19877Re-query CCDS DB by CCDS ID:29053.2See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29053.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067947.6 ENSMUSP00000069549.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067947.6Link to Ensembl Protein Viewer:ENSMUSP00000069549.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067947Re-query CCDS DB by Protein ID:ENSMUSP00000069549
Original member Current member NCBI NM_009071.2 NP_033097.1 Accepted alive Link to Nucleotide Sequence:NM_009071.2Link to Protein Sequence:NP_033097.1Re-query CCDS DB by Nucleotide ID:NM_009071Re-query CCDS DB by Protein ID:NP_033097Link to BLAST:NP_033097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033097.1 1354 P70335-1 1354 100% 0 0

Chromosomal Locations for CCDS 29053.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 10066048 10066051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10067471 10067678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10070219 10070480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10070622 10070700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10072832 10072920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10073115 10073185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10079115 10079274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10080351 10080539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10083122 10083210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10084318 10084411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10090813 10090978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10092129 10092223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10093908 10093977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10095413 10095597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10097483 10097643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10099257 10099407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10100922 10101028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10104074 10104320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10104418 10104509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10106322 10106457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10112344 10112392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10116774 10116862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10119885 10119945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10122609 10122768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10129305 10129396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10131530 10131668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10132128 10132272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10134416 10134500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10136096 10136271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10140176 10140313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10140788 10140888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10150235 10150316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10181225 10181317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4065 nt):
ATGTCGACTGGGGACAGTTTTGAGACTCGGTTTGAAAAAATCGACAACCTGCTGCGGGATCCCAAATCGG
AAGTGAATTCAGATTGTTTGCTGGATGGATTGGATGCCCTGGTTTATGATTTGGATTTTCCTGCCTTAAG
AAAAAACAAAAATATTGACAACTTTCTAAGCAGATATAAAGACACAATAAATAAAATTAGAGATTTACGG
ATGAAAGCAGAAGATTATGAAGTGGTAAAGGTAATCGGCAGAGGTGCATTTGGAGAAGTTCAATTGGTGA
GGCATAAATCCACTAGGAAGGTTTATGCTATGAAGCTGCTCAGCAAATTTGAAATGATTAAGAGATCGGA
TTCTGCTTTTTTCTGGGAAGAAAGGGACATCATGGCGTTTGCCAATAGTCCTTGGGTTGTTCAGCTTTTT
TATGCATTCCAAGATGACCGGTATCTCTACATGGTGATGGAGTACATGCCTGGCGGAGACCTTGTCAACC
TGATGAGCAACTATGACGTGCCTGAAAAATGGGCAAGATTCTATACTGCAGAAGTAGTTCTTGCATTGGA
TGCAATCCATTCCATGGGTTTTATTCATAGAGATGTAAAGCCTGATAACATGCTGCTGGATAAGTCTGGA
CATTTGAAGTTAGCAGATTTTGGTACTTGTATGAAGATGAATAAGGAAGGTATGGTACGATGTGACACAG
CAGTTGGAACACCTGATTATATCTCACCCGAAGTATTAAAATCCCAAGGCGGTGATGGCTATTATGGACG
AGAGTGTGACTGGTGGTCAGTTGGGGTATTTCTATATGAAATGCTCGTAGGTGACACACCTTTCTATGCA
GATTCTTTGGTTGGGACTTACAGTAAAATTATGAACCATAAAAATTCACTTACTTTCCCTGATGATAATG
ACATATCAAAAGAGGCAAAAAATCTCATTTGTGCCTTCCTTACAGACAGAGAAGTGAGATTGGGCAGAAA
TGGTGTAGAGGAAATCAAACGTCATCTCTTCTTCAAAAATGATCAGTGGGCTTGGGAAACGCTCCGAGAC
ACTGTAGCACCAGTTGTGCCTGATTTAAGTAGTGACATTGATACTAGTAATTTTGATGACTTAGAAGAAG
ATAAAGGAGATGAAGAAACATTTCCTATTCCAAAAGCTTTTGTTGGCAATCAGCTACCTTTTGTAGGATT
TACATATTATAGCAATCGTAGATACTTACCTTCAGCAAATGCCAGTGAGAACAGATCTAGCTCCAATGTG
GATAAAAGCTTGCAGGAAAGTTTACAGAAAACAATCTACAAGCTTGAAGAGCAACTGCATAATGAAATGC
AATTAAAAGATGAAATGGAGCAGAAATGCAGAACTTCAAACTTAAAACTAGACAAGATAATGAAAGAATT
GGATGAAGAGGGGAATCAAAGAAGAAATCTAGAATCTGCAGTGTCTCAAATTGAGAAAGAAAAGATGTTG
CTACAACATAGAATTAATGAGTACCAAAGAAAAGTGGAACAGGAAAATGAGAAGAGAAGAAATATAGAAA
ATGAAGTTTCTACACTAAAGGACCAGTTAGAAGACTTACGGAAAGCAAGTCAGACCTCACAGCTTGCTAA
TGAGAAGCTGACACAGTTACAGAAGCAGTTAGAAGAAGCGAATGACTTACTTAGGACAGAATCAGACACA
GCTGTAAGATTAAGGAAGAGTCACACAGAGATGAGCAAGTCAATTAGTCAGCTAGAGTCCCTGAACAGAG
AATTACAGGAAAGAAACAGAATTTTAGAGAATTCCAAGTCACAAGCAGACAAGGATTACTACCAGCTGCA
AGCTGTATTGGAAGCTGAGCGAAGAGACAGAGGGCATGATTCTGAGATGATTGGAGACCTTCAAGCACGA
ATTACATCTTTACAAGAAGAAGTGAAACATCTCAAACATAATCTTGAAAGAGTGGAAGGAGAAAGAAAAG
AGGCTCAAGACATGCTTAATCATTCAGAAAAGGAAAAGAATAATTTGGAGATAGATTTGAATTACAAGCT
CAAGTCTATACAACAGCGGTTAGAACAAGAAGTAAATGAACATAAAGTCACCAAAGCACGCCTAACTGAC
AAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGAAATGGAAAAAAAGCTGAAGGAAGAGA
GAGAAGCTCGAGAGAAGGCAGAAAATAGAGTTGTTGAGACTGAGAAACAATGTTCCATGCTAGATGTTGA
CCTGAAACAGTCTCAGCAGAAGCTAGAACATTTGACCGAAAATAAAGAAAGGATGGAGGATGAAGTTAAG
AATCTCGCCCTGCAGCTGGAACAGGAATCAAATAAACGGCTCTTGTTACAGAATGAATTGAAGACTCAAG
CATTTGAAGCAGACAATTTAAAAGGTTTAGAAAAACAGATGAAACAGGAAATAAATACTTTATTGGAAGC
AAAGAGATTGTTAGAATTTGAGTTAGCTCAGCTTACAAAGCAATATAGGGGAAATGAAGGGCAAATGCGG
GAGTTACAAGATCAACTTGAAGCTGAGCAGTATTTCTCTACACTTTATAAAACCCAAGTAAAGGAGCTTA
AAGAAGAAATTGAAGAAAAAAACCGAGAAAATTTAAGGAAAATACAGGAACTGCAAAGTGAAAAAGAAAC
TCTCTCTACTCAGTTGGATTTAGCAGAAACAAAAGCTGAGTCTGAGCAGCTGGCGCGAGGGATTCTGGAA
GAACAGTATTTTGAGTTGACTCAGGAAAGCAAGAAAGCTGCTTCAAGAAATAGACAAGAGATTACAGATA
AAGATCATACTGTTAGTCGGCTTGAAGAAACAAACAGTGTGCTAACCAAAGATATTGAAATGCTAAGAAA
AGAAAATGAAGAGCTAAATGAAAGAATGAGGACAGCAGAAGAAGAATATAAATTGAAGAAGGAGGAAGAA
ATAAATAATCTTAAGGCTGCTTTTGAAAAGAATATCAGTACCGAACGGACCCTTAAAACACAGGCTGTTA
ACAAGTTGGCAGAAATAATGAATCGCAAAGATTTTAAAATTGATCGAAAGAAAGCTAATACACAAGATTT
AAGAAAAAAAGAAAAGGAAAATAGAAAGCTACAACTGGAACTTAACCAAGAGAGAGAAAAATTTAACCAA
ATGGTGGTGAAACACCAGAAGGAGCTGAATGACATGCAAGCGCAATTGGTAGAAGAATGTACACATAGAA
ATGAACTTCAAATGCAGTTGGCTAGCAAAGAGAGTGATATTGAGCAGTTGCGGGCAAAACTTTTGGACCT
TTCGGATTCAACTAGTGTTGCTAGTTTTCCTAGTGCAGATGAAACTGATGGAAACCTTCCAGAGTCAAGA
ATTGAAGGTTGGCTTTCTGTACCAAATAGAGGAAATATCAAAAGATATGGCTGGAAGAAACAGTATGTTG
TGGTAAGCAGCAAAAAGATCTTGTTCTATAATGATGAACAAGATAAGGAACAATCCAGTCCATCTATGGT
GTTAGACATAGATAAATTGTTTCATGTCCGACCTGTAACCCAAGGAGATGTGTACAGAGCAGAAACTGAA
GAAATTCCTAAAATATTCCAGATACTATATGCAAATGAAGGTGAATGTAGAAAAGATATAGAAGTGGAAC
CGGTTCAACAAGGTGAAAAAACTAATTTCCAGAATCACAAAGGCCATGAATTCATTCCTACCCTCTACCA
CTTTCCTGCCAACTGTGAGGCCTGTGCCAAACCTTTGTGGCATGTCTTTAAGCCACCACCTGCCCTAGAG
TGTCGAAGATGCCATGTTAAGTGCCACAGAGACCATCTAGACAAGAAAGAGGACTTGATTTCCCCGTGCA
AAGTAAGTTACGATGTAACATCAGCAAGAGATATGCTGCTGTTAGCATGTTCTCAGGATGAACAAAAAAA
GTGGGTTACTCATCTAGTAAAGAAGATTCCTAAGAACCCACCATCTGGCTTTGTCCGTGCCTCTCCTCGA
ACGCTGTCAACAAGATCCACTGCAAATCAGTCTTTCCGCAAAGTAGTCAAAAATACATCTGGAAAAACTA
GTTAA

Translation (1354 aa):
MSTGDSFETRFEKIDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLR
MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLF
YAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG
HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA
DSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRD
TVAPVVPDLSSDIDTSNFDDLEEDKGDEETFPIPKAFVGNQLPFVGFTYYSNRRYLPSANASENRSSSNV
DKSLQESLQKTIYKLEEQLHNEMQLKDEMEQKCRTSNLKLDKIMKELDEEGNQRRNLESAVSQIEKEKML
LQHRINEYQRKVEQENEKRRNIENEVSTLKDQLEDLRKASQTSQLANEKLTQLQKQLEEANDLLRTESDT
AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQADKDYYQLQAVLEAERRDRGHDSEMIGDLQAR
ITSLQEEVKHLKHNLERVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSIQQRLEQEVNEHKVTKARLTD
KHQSIEEAKSVAMCEMEKKLKEEREAREKAENRVVETEKQCSMLDVDLKQSQQKLEHLTENKERMEDEVK
NLALQLEQESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQYRGNEGQMR
ELQDQLEAEQYFSTLYKTQVKELKEEIEEKNRENLRKIQELQSEKETLSTQLDLAETKAESEQLARGILE
EQYFELTQESKKAASRNRQEITDKDHTVSRLEETNSVLTKDIEMLRKENEELNERMRTAEEEYKLKKEEE
INNLKAAFEKNISTERTLKTQAVNKLAEIMNRKDFKIDRKKANTQDLRKKEKENRKLQLELNQEREKFNQ
MVVKHQKELNDMQAQLVEECTHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASFPSADETDGNLPESR
IEGWLSVPNRGNIKRYGWKKQYVVVSSKKILFYNDEQDKEQSSPSMVLDIDKLFHVRPVTQGDVYRAETE
EIPKIFQILYANEGECRKDIEVEPVQQGEKTNFQNHKGHEFIPTLYHFPANCEACAKPLWHVFKPPPALE
CRRCHVKCHRDHLDKKEDLISPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPR
TLSTRSTANQSFRKVVKNTSGKTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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