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Report for CCDS39246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39246.1 Public Mus musculus 5 Rph3a 23 108 98 CCDS HistoryNCBI Gene:19894Re-query CCDS DB by CCDS ID:39246.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079204.8 ENSMUSP00000078198.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079204.8Link to Ensembl Protein Viewer:ENSMUSP00000078198.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079204Re-query CCDS DB by Protein ID:ENSMUSP00000078198
Original member Current member EBI ENSMUST00000202406.3 ENSMUSP00000143917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202406.3Link to Ensembl Protein Viewer:ENSMUSP00000143917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202406Re-query CCDS DB by Protein ID:ENSMUSP00000143917
Original member Current member EBI ENSMUST00000202326.3 ENSMUSP00000144291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202326.3Link to Ensembl Protein Viewer:ENSMUSP00000144291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202326Re-query CCDS DB by Protein ID:ENSMUSP00000144291
Original member NCBI NM_001302344.1 NP_001289273.1 Updated not alive Link to Nucleotide Sequence:NM_001302344.1Link to Protein Sequence:NP_001289273.1Re-query CCDS DB by Nucleotide ID:NM_001302344Re-query CCDS DB by Protein ID:NP_001289273
Current member NCBI NM_001302344.2 NP_001289273.1 Accepted alive Link to Nucleotide Sequence:NM_001302344.2Link to Protein Sequence:NP_001289273.1Re-query CCDS DB by Nucleotide ID:NM_001302344Re-query CCDS DB by Protein ID:NP_001289273Link to BLAST:NP_001289273.1
Original member NCBI NM_001302345.1 NP_001289274.1 Updated not alive Link to Nucleotide Sequence:NM_001302345.1Link to Protein Sequence:NP_001289274.1Re-query CCDS DB by Nucleotide ID:NM_001302345Re-query CCDS DB by Protein ID:NP_001289274
Current member NCBI NM_001302345.2 NP_001289274.1 Accepted alive Link to Nucleotide Sequence:NM_001302345.2Link to Protein Sequence:NP_001289274.1Re-query CCDS DB by Nucleotide ID:NM_001302345Re-query CCDS DB by Protein ID:NP_001289274Link to BLAST:NP_001289274.1
Original member NCBI NM_011286.3 NP_035416.1 Updated not alive Link to Nucleotide Sequence:NM_011286.3Link to Protein Sequence:NP_035416.1Re-query CCDS DB by Nucleotide ID:NM_011286Re-query CCDS DB by Protein ID:NP_035416
Current member NCBI NM_011286.4 NP_035416.1 Accepted alive Link to Nucleotide Sequence:NM_011286.4Link to Protein Sequence:NP_035416.1Re-query CCDS DB by Nucleotide ID:NM_011286Re-query CCDS DB by Protein ID:NP_035416Link to BLAST:NP_035416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289273.1 681 P47708 681 100% 0 0
NP_001289274.1 681 P47708 681 100% 0 0
NP_035416.1 681 P47708 681 100% 0 0

Chromosomal Locations for CCDS 39246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120942168 120942298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120943018 120943114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120945388 120945469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120946352 120946506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120947052 120947108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120947848 120947974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120948739 120948848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120950312 120950386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120952062 120952141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120954405 120954596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120955385 120955444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120955897 120955983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120959259 120959411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120959495 120959533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120961226 120961391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120962399 120962485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120963824 120963953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120973298 120973444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120980130 120980141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120986437 120986495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGACTGACACTGTGGTGAACCGATGGATGTACCCTGGTGATGGCCCTCTGCAGTCAAATGACAAGGAAC
AGCTGCAGGCAGGATGGTCCGTCCATCCTGGAGCACAGACCGACAGGCAGAGGAAGCAGGAAGAACTGAC
AGACGAGGAGAAGGAGATCATCAACAGAGTGATTGCTCGGGCAGAGAAGATGGAAGCCATGGAACAGGAA
CGCATTGGGCGCCTGGTGGACCGTCTGGAGACCATGAGGAAGAATGTGGCTGGAGATGGCGTGAACCGCT
GCATTCTGTGTGGGGAACAGCTGGGTATGCTGGGCTCGGCCTGTGTCGTGTGTGAAGACTGTAAGAAGAA
TGTCTGCACCAAGTGTGGGGTTGAGACCTCCAACAACCGTCCGCATCCGGTATGGCTCTGCAAGATCTGC
CTTGAGCAGAGAGAGGTCTGGAAGCGCTCAGGAGCATGGTTCTTCAAAGGTTTCCCCAAGCAGGTCCTTC
CACAGCCCATGCCTATAAAGAAGACCAAGCCCCAGCAGCCTGCTGGTGAACCGGCCACCCAGGAGCAGCC
TACACCTGAGTCCAGGCATCCAGCCAGGGCTCCAGCTCGAGGTGACATGGAGGACAGGAGGCCCCCAGGG
CAGAAGCCAGGCCCTGACCTCACCTCTGCTCCTGGGAGAGGAAGCCATGGGCCTCCCACGCGTAGGGCCT
CTGAGGCACGGATGAGTACAGCCGCCCGGGATTCTGAGGGCTGGGACCATGCCCATGGTGGGGGTACTGG
AGACACCAGCCGTAGCCCAGCAGGTTTGAGGCGAGCTAACTCAGTCCAGGCAGCCCGCCCTGCCCCAGCC
CCAGTGCCAAGCCCAGCACCTCCTCAGCCGGTGCAGCCAGGGCCCCCTGGGGGCAGCAGGGCCACTCCTG
GGCCAGGACGCTTTCCGGAGCAGAGCACAGAGGCTCCTCCAAGTGACCCTGGCTATCCAGGGGCTGTCGC
CCCAGCCCGAGAGGAGAGGACAGGACCTGCGGGGGGCTTCCAGGCAGCGCCGCACACTGCAGCCCCCTAT
TCCCAGGCAGCCCCTGCTCGCCAGCCACCACCTGCGGAGGAGGAGGAGGAAGAAGCCAATAGTTATGACT
CTGATGAAGCAACCACACTGGGTGCCCTGGAATTCAGCCTTCTCTATGACCAAGACAACAGCAACCTGCA
GTGCACCATCATCAGGGCGAAGGGACTGAAGCCCATGGATTCCAATGGCTTGGCAGATCCCTATGTGAAG
CTTCATCTGCTGCCTGGAGCCAGCAAGTCCAACAAGCTTCGTACAAAGACCCTGCGCAACACTCGGAACC
CTGTGTGGAATGAGACACTGCAGTATCATGGCATTACAGAGGAGGACATGCAGAGGAAGACACTAAGGAT
CTCCGTGTGTGACGAGGACAAGTTTGGCCACAACGAGTTCATTGGTGAGACCAGGTTCTCGCTCAAGAAG
CTGAAGGCTAACCAGAGGAAAAACTTCAACATCTGCCTGGAGCGGGTGATCCCGATGAAGAGAGCAGGGA
CCACCGGGTCGGCCCGTGGCATGGCTCTCTATGAGGAGGAGCAGGTAGAGCGGATCGGCGATATAGAGGA
ACGGGGCAAGATCCTGGTGTCCCTCATGTACAGCACGCAGCAGGGCGGCCTCATTGTGGGAATCATCCGC
TGTGTGCACCTGGCCGCCATGGATGCCAACGGCTACTCAGACCCCTTTGTCAAGCTCTGGCTGAAACCGG
ACATGGGGAAGAAAGCCAAGCACAAGACTCAGATTAAAAAGAAGACCCTGAATCCCGAGTTTAACGAGGA
GTTCTTTTATGATATCAAACACAGCGACCTGGCTAAAAAGTCCCTGGATATCTCGGTGTGGGACTACGAC
ATTGGCAAGTCTAATGATTACATCGGAGGCTGCCAGCTGGGGATCTCGGCCAAAGGCGAGCGCTTGAAAC
ATTGGTATGAGTGTTTGAAGAACAAAGACAAGAAGATTGAGCGCTGGCACCAACTGCAGAACGAGAACCA
CGTGTCCAGTGATTAG

Translation (681 aa):
MTDTVVNRWMYPGDGPLQSNDKEQLQAGWSVHPGAQTDRQRKQEELTDEEKEIINRVIARAEKMEAMEQE
RIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC
LEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQPAGEPATQEQPTPESRHPARAPARGDMEDRRPPG
QKPGPDLTSAPGRGSHGPPTRRASEARMSTAARDSEGWDHAHGGGTGDTSRSPAGLRRANSVQAARPAPA
PVPSPAPPQPVQPGPPGGSRATPGPGRFPEQSTEAPPSDPGYPGAVAPAREERTGPAGGFQAAPHTAAPY
SQAAPARQPPPAEEEEEEANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVK
LHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK
LKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIR
CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD
IGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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