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Report for CCDS18999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18999.1 Public Mus musculus 4 Rpl22 23 108 98 CCDS HistoryNCBI Gene:19934Re-query CCDS DB by CCDS ID:18999.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103191.10 ENSMUSP00000099480.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103191.10Link to Ensembl Protein Viewer:ENSMUSP00000099480.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103191Re-query CCDS DB by Protein ID:ENSMUSP00000099480
Original member Current member EBI ENSMUST00000139685.7 ENSMUSP00000118787.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139685.7Link to Ensembl Protein Viewer:ENSMUSP00000118787.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139685Re-query CCDS DB by Protein ID:ENSMUSP00000118787
Original member Current member EBI ENSMUST00000188151.1 ENSMUSP00000140276.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188151.1Link to Ensembl Protein Viewer:ENSMUSP00000140276.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188151Re-query CCDS DB by Protein ID:ENSMUSP00000140276
Original member NCBI NM_009079.3 NP_033105.1 Updated not alive Link to Nucleotide Sequence:NM_009079.3Link to Protein Sequence:NP_033105.1Re-query CCDS DB by Nucleotide ID:NM_009079Re-query CCDS DB by Protein ID:NP_033105
Current member NCBI NM_009079.4 NP_033105.1 Accepted alive Link to Nucleotide Sequence:NM_009079.4Link to Protein Sequence:NP_033105.1Re-query CCDS DB by Nucleotide ID:NM_009079Re-query CCDS DB by Protein ID:NP_033105Link to BLAST:NP_033105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033105.1 128 P67984 128 100% 0 0

Chromosomal Locations for CCDS 18999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152325884 152325895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152327481 152327585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152330004 152330128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152332280 152332424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGCGCCTGTGAAAAAGCTTGTGGCGAAGGGGGGCAAAAAAAAGAAGCAGGTTTTGAAGTTCACCCTGG
ACTGCACTCACCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTCCTCCAGGAGAGAAT
CAAGGTGAATGGGAAAGCTGGCAACCTCGGCGGAGGAGTCGTGACCATCGAACGCAGCAAGAGCAAGATC
ACTGTCACTTCAGAGGTGCCTTTCTCCAAAAGGTATTTGAAATATCTCACCAAAAAATATTTGAAGAAGA
ACAACCTCCGAGACTGGCTGCGTGTTGTCGCCAACAGCAAAGAGAGTTACGAGCTGCGTTACTTCCAGAT
TAACCAGGATGAAGAGGAGGAGGAAGACGAGGATTAG

Translation (128 aa):
MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI
TVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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