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Report for CCDS42502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42502.1 Public Homo sapiens 19 ZNF627 24 110 108 CCDS HistoryNCBI Gene:199692Re-query CCDS DB by CCDS ID:42502.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361113.10 ENSP00000354414.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361113.10Link to Ensembl Protein Viewer:ENSP00000354414.4Re-query CCDS DB by Nucleotide ID:ENST00000361113Re-query CCDS DB by Protein ID:ENSP00000354414
Original member Current member NCBI NM_145295.4 NP_660338.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145295.4Link to Protein Sequence:NP_660338.1Re-query CCDS DB by Nucleotide ID:NM_145295Re-query CCDS DB by Protein ID:NP_660338Link to BLAST:NP_660338.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660338.1 461 Q7L945 461 100% 0 0

Chromosomal Locations for CCDS 42502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11597628 11597630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11614527 11614653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11614827 11614887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11616695 11617889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGATTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATCCTT
CCCAGAAGAATCTCTACAGGGATGTGATGCGGGAAACCTTCAGGAACCTGGCTTCTGTAGGAAAACAATG
GGAAGACCAGAACATTGAAGACCCATTCAAAATTCCCAGGAGAAATATAAGTCATATTCCAGAGAGACTC
TGTGAAAGTAAAGAAGGTGGTCAAGGTGAAGAAACCTTCAGCCAGATTCCAGATGGTATTCTGAACAAGA
AAACTCCTGGAGTAAAACCGTGTGAAAGCAGTGTGTGTGGAGAAGTTGGCATGGGTCCTTCATCACTTAA
TAGGCACATCAGAGATCACACTGGACGTGAACCAAATGAATATCAGGAATATGGAAAGAAGTCATATACA
CGTAACCAGTGTGGACGAGCCTTGAGTTATCATCGCTCTTTTCCAGTACGTGAAAGGACTCATCCTGGAG
GAAAGCCCTATGATTGTAAGGAATGTGGAGAAACCTTTATTTCTCTTGTAAGCATTCGAAGACACATGTT
AACGCATAGGGGAGGTGTACCTTACAAATGTAAGGTGTGTGGGAAAGCCTTTGATTATCCCAGTTTATTT
CGTATACATGAAAGAAGTCACACTGGAGAGAAACCTTATGAATGCAAGCAATGTGGGAAAGCCTTCAGTT
GTTCCAGTTACATTAGAATACATGAAAGGACTCACACTGGAGATAAACCCTATGAATGCAAGCAGTGTGG
GAAAGCTTTCAGTTGTTCCAAGTACATTCGAATCCATGAACGAACTCACACAGGAGAGAAACCCTACGAA
TGTAAACAGTGCGGTAAAGCCTTTAGGTGCGCCAGTTCTGTTCGAAGTCACGAGAGGACTCACACCGGAG
AGAAACTTTTTGAATGTAAGGAATGCGGGAAGGCTTTGACTTGTCTTGCAAGTGTTAGAAGACACATGAT
AAAGCACACTGGCAATGGACCTTATAAATGTAAGGTGTGTGGGAAAGCCTTTGATTTCCCCAGTTCATTT
CGAATCCATGAAAGGACCCACACTGGAGAGAAACCCTATGATTGTAAGCAATGTGGGAAAGCCTTCAGTT
GTTCCAGTTCGTTTCGAAAACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTACAAAATGTGG
GAAAGCCTTCAGTCGTTCCAGTTACTTCCGAATCCATGAAAGAACTCACACTGGAGAGAAACCCTATGAA
TGTAAGCAATGTGGGAAAGCCTTCAGTCGATCCACTTACTTTCGAGTACATGAAAAAATTCATACTGGAG
AGAAACCCTATGAGAACCCTAACCCTAACGCTTCAGTTGTCCCAGTTCTTTCATGA

Translation (461 aa):
MDSVAFEDVAVNFTLEEWALLDPSQKNLYRDVMRETFRNLASVGKQWEDQNIEDPFKIPRRNISHIPERL
CESKEGGQGEETFSQIPDGILNKKTPGVKPCESSVCGEVGMGPSSLNRHIRDHTGREPNEYQEYGKKSYT
RNQCGRALSYHRSFPVRERTHPGGKPYDCKECGETFISLVSIRRHMLTHRGGVPYKCKVCGKAFDYPSLF
RIHERSHTGEKPYECKQCGKAFSCSSYIRIHERTHTGDKPYECKQCGKAFSCSKYIRIHERTHTGEKPYE
CKQCGKAFRCASSVRSHERTHTGEKLFECKECGKALTCLASVRRHMIKHTGNGPYKCKVCGKAFDFPSSF
RIHERTHTGEKPYDCKQCGKAFSCSSSFRKHERIHTGEKPYKCTKCGKAFSRSSYFRIHERTHTGEKPYE
CKQCGKAFSRSTYFRVHEKIHTGEKPYENPNPNASVVPVLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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