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Report for CCDS1419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1419.1 Public Homo sapiens 1 ELF3 24 110 108 CCDS HistoryNCBI Gene:1999Re-query CCDS DB by CCDS ID:1419.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359651.7 ENSP00000352673.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359651.7Link to Ensembl Protein Viewer:ENSP00000352673.3Re-query CCDS DB by Nucleotide ID:ENST00000359651Re-query CCDS DB by Protein ID:ENSP00000352673
Original member Current member EBI ENST00000367283.7 ENSP00000356252.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367283.7Link to Ensembl Protein Viewer:ENSP00000356252.3Re-query CCDS DB by Nucleotide ID:ENST00000367283Re-query CCDS DB by Protein ID:ENSP00000356252
Original member Current member EBI ENST00000367284.10 ENSP00000356253.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367284.10Link to Ensembl Protein Viewer:ENSP00000356253.5Re-query CCDS DB by Nucleotide ID:ENST00000367284Re-query CCDS DB by Protein ID:ENSP00000356253
Original member Current member NCBI NM_001114309.2 NP_001107781.1 Accepted alive Link to Nucleotide Sequence:NM_001114309.2Link to Protein Sequence:NP_001107781.1Re-query CCDS DB by Nucleotide ID:NM_001114309Re-query CCDS DB by Protein ID:NP_001107781Link to BLAST:NP_001107781.1
Original member Current member NCBI NM_004433.5 NP_004424.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004433.5Link to Protein Sequence:NP_004424.3Re-query CCDS DB by Nucleotide ID:NM_004433Re-query CCDS DB by Protein ID:NP_004424Link to BLAST:NP_004424.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107781.1 371 P78545-1 371 100% 0 0
NP_004424.3 371 P78545-1 371 100% 0 0

Chromosomal Locations for CCDS 1419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 202011137 202011299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202011957 202012178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202012344 202012436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202012640 202012759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202012947 202013036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202013182 202013298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202013829 202014024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202015209 202015323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGCTGCAACCTGTGAGATTAGCAACATTTTTAGCAACTACTTCAGTGCGATGTACAGCTCGGAGGACT
CCACCCTGGCCTCTGTTCCCCCTGCTGCCACCTTTGGGGCCGATGACTTGGTACTGACCCTGAGCAACCC
CCAGATGTCATTGGAGGGTACAGAGAAGGCCAGCTGGTTGGGGGAACAGCCCCAGTTCTGGTCGAAGACG
CAGGTTCTGGACTGGATCAGCTACCAAGTGGAGAAGAACAAGTACGACGCAAGCGCCATTGACTTCTCAC
GATGTGACATGGATGGCGCCACCCTCTGCAATTGTGCCCTTGAGGAGCTGCGTCTGGTCTTTGGGCCTCT
GGGGGACCAACTCCATGCCCAGCTGCGAGACCTCACTTCCAGCTCTTCTGATGAGCTCAGTTGGATCATT
GAGCTGCTGGAGAAGGATGGCATGGCCTTCCAGGAGGCCCTAGACCCAGGGCCCTTTGACCAGGGCAGCC
CCTTTGCCCAGGAGCTGCTGGACGACGGTCAGCAAGCCAGCCCCTACCACCCCGGCAGCTGTGGCGCAGG
AGCCCCCTCCCCTGGCAGCTCTGACGTCTCCACCGCAGGGACTGGTGCTTCTCGGAGCTCCCACTCCTCA
GACTCCGGTGGAAGTGACGTGGACCTGGATCCCACTGATGGCAAGCTCTTCCCCAGCGATGGTTTTCGTG
ACTGCAAGAAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGGCCGGCCCCGAAAGCTGAGCAAAGAGTA
CTGGGACTGTCTCGAGGGCAAGAAGAGCAAGCACGCGCCCAGAGGCACCCACCTGTGGGAGTTCATCCGG
GACATCCTCATCCACCCGGAGCTCAACGAGGGCCTCATGAAGTGGGAGAATCGGCATGAAGGCGTCTTCA
AGTTCCTGCGCTCCGAGGCTGTGGCCCAACTATGGGGCCAAAAGAAAAAGAACAGCAACATGACCTACGA
GAAGCTGAGCCGGGCCATGAGGTACTACTACAAACGGGAGATCCTGGAACGGGTGGATGGCCGGCGACTC
GTCTACAAGTTTGGCAAAAACTCAAGCGGCTGGAAGGAGGAAGAGGTTCTCCAGAGTCGGAACTGA

Translation (371 aa):
MAATCEISNIFSNYFSAMYSSEDSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWLGEQPQFWSKT
QVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLTSSSSDELSWII
ELLEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYHPGSCGAGAPSPGSSDVSTAGTGASRSSHSS
DSGGSDVDLDPTDGKLFPSDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIR
DILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRL
VYKFGKNSSGWKEEEVLQSRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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