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Report for CCDS12958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12958.1 Public Homo sapiens 19 ZSCAN4 24 110 108 CCDS HistoryNCBI Gene:201516Re-query CCDS DB by CCDS ID:12958.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318203.9 ENSP00000321963.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318203.9Link to Ensembl Protein Viewer:ENSP00000321963.4Re-query CCDS DB by Nucleotide ID:ENST00000318203Re-query CCDS DB by Protein ID:ENSP00000321963
Original member Current member NCBI NM_001384833.1 NP_001371762.1 Accepted alive Link to Nucleotide Sequence:NM_001384833.1Link to Protein Sequence:NP_001371762.1Re-query CCDS DB by Nucleotide ID:NM_001384833Re-query CCDS DB by Protein ID:NP_001371762Link to BLAST:NP_001371762.1
Original member Current member NCBI NM_152677.4 NP_689890.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152677.4Link to Protein Sequence:NP_689890.1Re-query CCDS DB by Nucleotide ID:NM_152677Re-query CCDS DB by Protein ID:NP_689890Link to BLAST:NP_689890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371762.1 433 Q8NAM6 433 100% 0 0
NP_689890.1 433 Q8NAM6 433 100% 0 0

Chromosomal Locations for CCDS 12958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57676146 57676541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57677914 57678079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57678166 57678905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGCTTTAGATCTAAGAACCATATTTCAGTGTGAACCATCCGAGAATAATCTTGGATCAGAAAATTCAG
CG
TTTCAACAAAGCCAAGGACCTGCTGTTCAGAGAGAAGAAGGGATTTCTGAGTTCTCAAGAATGGTGCT
C
AATTCATTTCAAGACAGCAATAATTCATATGCAAGGCAGGAATTGCAAAGACTTTATAGGATCTTTCAC
TCA
TGGCTGCAACCAGAAAAGCACAGCAAGGATGAAATTATTTCTCTATTAGTCCTGGAGCAGTTTATGA
TT
GGTGGCCACTGCAATGACAAAGCCAGTGTGAAAGAGAAATGGAAATCAAGTGGCAAAAACTTGGAGAG
A
TTCATAGAAGACCTGACTGATGACAGCATAAATCCACCTGCCTTAGTCCACGTCCACATGCAGGGACAG
GAA
GCTCTCTTTTCTGAGGATATGCCCTTAAGAGATGTCATTGTTCATCTCACAAAACAAGTGAATGCCC
AA
ACCACAAGAGAAGCAAACATGGGGACACCCTCCCAGACTTCCCAAGATACTTCCTTAGAAACAGGACA
A
GGATATGAAGATGAACAAGATGGCTGGAACAGTTCTTCGAAAACTACTCGAGTAAATGAAAATATTACT
AAT
CAAGGCAATCAAATAGTTTCCCTAATCATCATCCAGGAAGAGAACGGTCCTAGGCCTGAAGAGGGAG
GT
GTTTCTTCTGACAACCCATACAACTCAAAAAGAGCAGAGCTAGTCACTGCTAGATCTCAGGAAGGGTC
C
ATAAATGGAATCACTTTCCAAGGTGTCCCTATGGTGATGGGAGCAGGGTGTATCTCTCAACCAGAGCAG
TCC
TCCCCTGAGTCTGCCCTTACCCACCAGAGCAATGAGGGAAATTCCACATGTGAGGTACATCAGAAAG
GA
TCCCATGGAGTCCAAAAATCATACAAATGTGAAGAATGCCCCAAGGTCTTTAAGTATCTCTGTCACTT
A
TTAGCTCACCAGAGAAGACACAGGAATGAGAGGCCATTTGTTTGTCCCGAGTGTCAAAAAGGCTTCTTC
CAG
ATATCAGACCTACGGGTGCATCAGATAATTCACACAGGAAAGAAGCCTTTCACATGCAGCATGTGTA
AA
AAGTCCTTCAGCCACAAAACCAACCTGCGGTCTCATGAGAGAATCCACACAGGAGAAAAGCCTTATAC
A
TGTCCCTTTTGTAAGACAAGCTACCGCCAGTCATCCACATACCACCGCCATATGAGGACTCATGAGAAA
ATT
ACCCTGCCAAGTGTTCCCTCCACACCAGAAGCTTCCTAA


Translation (433 aa):
MALDLRTIFQCEPSENNLGSENSAFQQSQGPAVQREEGISEFSRMVLNSFQDSNNSYARQELQRLYRIFH
S
WLQPEKHSKDEIISLLVLEQFMIGGHCNDKASVKEKWKSSGKNLERFIEDLTDDSINPPAL
VHVHMQGQ
E
ALFSEDMPLRDVIVHLTKQVNAQTTREANMGTPSQTSQDTSLETGQ
GYEDEQDGWNSSSKTTRVNENIT
N
QGNQIVSLIIIQEENGPRPEEGGVSSDNPYNSKRAELVTARSQEGSINGITFQGVPMVMGAGCISQPEQ
S
SPESALTHQSNEGNSTCEVHQKGSHGVQKSYKCEECPKVFKYLCHLLAHQRRHRNERPFVCPECQKGFF
Q
ISDLRVHQIIHTGKKPFTCSMCKKSFSHKTNLRSHERIHTGEKPYTCPFCKTSYRQSSTYHRHMRTHEK
I
TLPSVPSTPEAS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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