NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14194.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14194.2 Public Homo sapiens X BCLAF3 24 110 108 CCDS HistoryNCBI Gene:256643Re-query CCDS DB by CCDS ID:14194.2Re-query CCDS DB by GeneID:256643See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14194.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379687.8 ENSP00000369009.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379687.8Link to Ensembl Protein Viewer:ENSP00000369009.3Re-query CCDS DB by Nucleotide ID:ENST00000379687Re-query CCDS DB by Protein ID:ENSP00000369009
Original member Current member NCBI NM_198279.4 NP_938020.2 Accepted alive Link to Nucleotide Sequence:NM_198279.4Link to Protein Sequence:NP_938020.2Re-query CCDS DB by Nucleotide ID:NM_198279Re-query CCDS DB by Protein ID:NP_938020Link to BLAST:NP_938020.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938020.2 682 A2AJT9-2 682 100% 0 0

Chromosomal Locations for CCDS 14194.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 19917305 19917334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19929785 19929940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19935809 19935898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19937505 19937532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19950753 19950868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19952988 19953051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19953778 19953892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19955391 19955566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19965044 19965706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19966080 19966649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 19970224 19970264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGGCACGGTCACGATCTAGATCCCCCAGGTGGAAACACAGGTCTTTATCACCAGTACCTAGAAATGCTG
AACACTACAAGCAAAGACATTCACACGGGCATTATGGCTGTGAATATAGGAAGGATCCAAAAAGACCCGT
CGCGTGGAGAATGGACAGTGAGAAACATGGACAGAGTAAACCAAGGATTCCCTCTCGTGGAAATATATAT
TACCAGTCTTATGAACATAGATCACCTTCCCCTAACATAAGAAACTCTTTAGAAAATGTTTATATGTATA
AGCCTCACAGAGGATATTCGCCTGGAAGAGGGGACAGTAACAGGAGAGCTCAGTATATGCCCAAATACTC
AGAGGGTATACCCTACAAAGAGCATGAAAGGAATTCTTATCCCCAGAAAGTGCAAGGAGGGCATAGTCCT
GATGACCACAGAGTTAGAGGAAGTGGAAAAGGAGGGAAACCACCTCAGAGGTCAATAGCAGATTCTTTTA
GATTTGAAGGAAAGTGGCATGAAGATGAGTTGAGGCACCAGAGGATACAAGAAGAAAAATACTCCCAGTC
AACTAGAAGAGGCTCTGAAGACTTTGAGACAAGGAGCTCATTTCAGAAGAGGTATCCTGAGGATCGTGAT
TTCAGAAAATATGGACACACATCAAAAAGACCTAAAGACGTGGAGAGGTATGAAAGCAGAGAGCCTGCCA
GGAACCCAAAGTGGAAGCCTGAGCATTCCCTCCCACCTTACCAAGAGGACACAGACCAGTGGAACCTTGG
GCCCCAAACTTATCGACATGCTGAGAGGGAACACCCAGAGACCAGTTCAGCAACCAAAGTATCCTATGAC
TATCGTCACAAACGTCCTAAGCTCTTGGATGGGGACCAGGACTTTTCTGATGGGAGAACTCAGAAGTACT
GTAAGGAAGAAGATAGAAAATATAGTTTTCAAAAAGGCCCTCTAAATAGAGAGTTAGATTGTTTTAATAC
TGGAAGAGGGAGAGAGACTCAAGATGGACAAGTCAAAGAACCTTTTAAACCGTCTAAGAAAGACAGCATT
GCCTGTACTTATTCAAATAAAAATGATGTTGATTTGCGATCTAGTAATGACAAATGGAAGGAAAAAATAA
AGAAAGAAGGGGATTGTAGAAAAGAGAGCAATTCTTCCAGTAACCAACTTGATAAAAGTCAAAAACTTCC
TGATGTGAAACCCTCGCCTATCAATCTTAGGAAGAAATCACTTACAGTTAAAGTAGATGTGAAGAAAACA
GTAGATACATTCAGGGTTGCTTCTAGCTATTCCACAGAGAGACAGATGTCACATGATTTGGTTGCTGTTG
GCAGGAAAAGTGAGAACTTTCATCCAGTGTTTGAACATCTTGACTCAACTCAGAATACTGAAAACAAACC
TACAGGAGAATTTGCTCAGGAAATCATAACAATAATCCATCAAGTTAAAGCAAATTATTTTCCATCACCT
GGCATTACTTTACATGAGCGTTTCTCAACAATGCAAGATATACACAAGGCAGATGTAAATGAAATTCCAT
TGAATTCAGATCCAGAAATACACAGGAGAATAGATATGTCTTTGGCCGAGCTTCAGAGTAAACAAGCTGT
GATCTATGAATCGGAACAGACTCTGATCAAAATAATAGATCCAAATGACCTACGACATGACATTGAAAGA
AGGCGAAAAGAACGGTTACAGAATGAAGATGAGCACATTTTTCACATAGCTAGTGCTGCAGAGAGGGATG
ATCAGAATTCCAGTTTTTCAAAGAATTATACTACGCAGAGAAAAGACATAATTACTCACAAACCATTTGA
GGTTGAGGGAAACCACCGAAACACAAGAGTAAGACCTTTTAAGAGCAACTTTAGAGGTGGCAGATGCCAG
CCCAATTATAAATCAGGCCTGGTACAGAAGAGCTTGTACATTCAGGCTAAGTATCAGCGTTTACGGTTCA
CTGGCCCAAGGGGATTTATCACTCATAAGTTCAGAGAAAGATTAATGAGAAAAAAGAAGGAATATACAGA
TGTTGCCACAGGAATCTAA

Translation (682 aa):
MARSRSRSPRWKHRSLSPVPRNAEHYKQRHSHGHYGCEYRKDPKRPVAWRMDSEKHGQSKPRIPSRGNIY
YQSYEHRSPSPNIRNSLENVYMYKPHRGYSPGRGDSNRRAQYMPKYSEGIPYKEHERNSYPQKVQGGHSP
DDHRVRGSGKGGKPPQRSIADSFRFEGKWHEDELRHQRIQEEKYSQSTRRGSEDFETRSSFQKRYPEDRD
FRKYGHTSKRPKDVERYESREPARNPKWKPEHSLPPYQEDTDQWNLGPQTYRHAEREHPETSSATKVSYD
YRHKRPKLLDGDQDFSDGRTQKYCKEEDRKYSFQKGPLNRELDCFNTGRGRETQDGQVKEPFKPSKKDSI
ACTYSNKNDVDLRSSNDKWKEKIKKEGDCRKESNSSSNQLDKSQKLPDVKPSPINLRKKSLTVKVDVKKT
VDTFRVASSYSTERQMSHDLVAVGRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSP
GITLHERFSTMQDIHKADVNEIPLNSDPEIHRRIDMSLAELQSKQAVIYESEQTLIKIIDPNDLRHDIER
RRKERLQNEDEHIFHIASAAERDDQNSSFSKNYTTQRKDIITHKPFEVEGNHRNTRVRPFKSNFRGGRCQ
PNYKSGLVQKSLYIQAKYQRLRFTGPRGFITHKFRERLMRKKKEYTDVATGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH