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Report for CCDS3845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3845.1 Public Homo sapiens 4 SORBS2 24 110 108 CCDS HistoryNCBI Gene:8470Re-query CCDS DB by CCDS ID:3845.1Re-query CCDS DB by GeneID:8470See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284776.11 ENSP00000284776.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000284776.11Link to Ensembl Protein Viewer:ENSP00000284776.7Re-query CCDS DB by Nucleotide ID:ENST00000284776Re-query CCDS DB by Protein ID:ENSP00000284776
Original member Current member NCBI NM_001394266.1 NP_001381195.1 Accepted alive Link to Nucleotide Sequence:NM_001394266.1Link to Protein Sequence:NP_001381195.1Re-query CCDS DB by Nucleotide ID:NM_001394266Re-query CCDS DB by Protein ID:NP_001381195Link to BLAST:NP_001381195.1
Original member Current member NCBI NM_001394267.1 NP_001381196.1 Accepted alive Link to Nucleotide Sequence:NM_001394267.1Link to Protein Sequence:NP_001381196.1Re-query CCDS DB by Nucleotide ID:NM_001394267Re-query CCDS DB by Protein ID:NP_001381196Link to BLAST:NP_001381196.1
Original member Current member NCBI NM_001394268.1 NP_001381197.1 Accepted alive Link to Nucleotide Sequence:NM_001394268.1Link to Protein Sequence:NP_001381197.1Re-query CCDS DB by Nucleotide ID:NM_001394268Re-query CCDS DB by Protein ID:NP_001381197Link to BLAST:NP_001381197.1
Original member Current member NCBI NM_001394270.1 NP_001381199.1 Accepted alive Link to Nucleotide Sequence:NM_001394270.1Link to Protein Sequence:NP_001381199.1Re-query CCDS DB by Nucleotide ID:NM_001394270Re-query CCDS DB by Protein ID:NP_001381199Link to BLAST:NP_001381199.1
Original member Current member NCBI NM_001394271.1 NP_001381200.1 Accepted alive Link to Nucleotide Sequence:NM_001394271.1Link to Protein Sequence:NP_001381200.1Re-query CCDS DB by Nucleotide ID:NM_001394271Re-query CCDS DB by Protein ID:NP_001381200Link to BLAST:NP_001381200.1
Original member Current member NCBI NM_001394272.1 NP_001381201.1 Accepted alive Link to Nucleotide Sequence:NM_001394272.1Link to Protein Sequence:NP_001381201.1Re-query CCDS DB by Nucleotide ID:NM_001394272Re-query CCDS DB by Protein ID:NP_001381201Link to BLAST:NP_001381201.1
Original member Current member NCBI NM_021069.6 NP_066547.1 Accepted alive Link to Nucleotide Sequence:NM_021069.6Link to Protein Sequence:NP_066547.1Re-query CCDS DB by Nucleotide ID:NM_021069Re-query CCDS DB by Protein ID:NP_066547Link to BLAST:NP_066547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381195.1 1100 O94875-1 1100 100% 0 0
NP_001381196.1 1100 O94875-1 1100 100% 0 0
NP_001381197.1 1100 O94875-1 1100 100% 0 0
NP_001381199.1 1100 O94875-1 1100 100% 0 0
NP_001381200.1 1100 O94875-1 1100 100% 0 0
NP_001381201.1 1100 O94875-1 1100 100% 0 0
NP_066547.1 1100 O94875-1 1100 100% 0 0

Chromosomal Locations for CCDS 3845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185587627 185587688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185589679 185589785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185593886 185593935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185611780 185611980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185614831 185614959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185615045 185615159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185618585 185618631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185620063 185620151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185622914 185624494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185626832 185627019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185630549 185630598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185646668 185646782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185649467 185649656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185651784 185651828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185652662 185652728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185657424 185657596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185662104 185662197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGAGTTACTATCAGAGGCCGTTTTCCCCCTCGGCATATTCTCTCCCAGCCTCACTCAACTCCAGCATTG
TCATGCAGCACGGCACATCCCTCGATTCCACAGACACATATCCCCAGCATGCGCAGTCTCTGGATGGCAC
CACCAGCAGCTCTATCCCCCTGTACCGATCCTCAGAGGAAGAGAAGAGAGTGACAGTCATCAAAGCCCCG
CATTACCCAGGGATCGGGCCCGTGGATGAATCCGGAATCCCCACAGCAATTAGAACGACAGTCGACCGGC
CCAAGGACTGGTACAAGACGATGTTTAAGCAAATTCACATGGTGCACAAGCCGGATGATGACACAGACAT
GTATAATACTCCTTATACATACAATGCAGGTCTGTACAACCCACCCTACAGTGCTCAGTCACACCCTGCT
GCAAAGACCCAAACCTACAGACCTCTTTCCAAAAGCCACTCCGACAACAGCCCCAATGCCTTTAAGGATG
CGTCCTCCCCAGTGCCTCCCCCACATGTTCCACCTCCAGTCCCGCCGCTTCGACCAAGAGATCGGTCTTC
AACAGAAAAGCATGACTGGGATCCTCCAGACAGAAAAGTGGACACAAGAAAATTTCGGTCTGAGCCAAGG
AGTATTTTTGAATATGAACCTGGCAAGTCATCAATTCTTCAGCATGAAAGACCAGCCTCCTTGTATCAGT
CCTCTATAGACAGAAGCCTGGAAAGACCCATGAGTTCTGCAAGCATGGCCAGTGACTTCAGGAAGCGGAG
GAAGAGCGAGCCTGCAGTGGGTCCACCACGGGGCTTGGGAGATCAAAGTGCGAGCAGGACTAGCCCAGGC
CGAGTGGACCTCCCAGGATCAAGCACCACTCTTACAAAGTCTTTCACTAGCTCTTCTCCTTCTTCCCCAT
CAAGAGCAAAAGGTGGGGATGATAGCAAAATATGTCCATCCCTTTGCAGTTACTCAGGGCTCAACGGCAA
CCCCTCCAGTGAGTTAGATTACTGTAGCACTTACAGACAGCACTTGGATGTCCCTCGGGACTCACCAAGA
GCCATTAGTTTCAAGAACGGCTGGCAAATGGCCCGGCAAAACGCAGAAATCTGGAGCAGCACGGAAGAAA
CCGTCTCTCCCAAAATCAAATCCCGGAGCTGTGACGATCTCCTAAACGACGACTGCGATAGCTTCCCGGA
CCCGAAAGTCAAGTCGGAAAGCATGGGCTCCCTGTTATGTGAGGAGGACTCCAAGGAGAGCTGCCCCATG
GCGTGGGGGTCCCCCTACGTCCCGGAGGTTCGCAGTAACGGCAGATCAAGGATCAGACACAGGTCAGCCC
GCAACGCCCCGGGGTTCCTGAAGATGTACAAGAAAATGCACCGCATCAACCGCAAGGACCTGATGAACTC
CGAGGTGATCTGCTCCGTGAAGTCCAGGATTCTGCAGTACGAGAGCGAGCAGCAGCACAAGGACCTGCTG
CGCGCCTGGAGCCAGTGCTCCACGGAGGAGGTGCCCCGGGACATGGTGCCCACACGCATCTCCGAATTCG
AAAAGCTGATCCAGAAGTCCAAATCCATGCCAAATTTAGGGGATGACATGCTGTCTCCCGTAACCCTAGA
ACCACCGCAAAATGGCCTATGTCCCAAGAGGCGGTTTTCCATTGAGTATTTGCTGGAGGAAGAAAATCAA
AGCGGCCCCCCCGCTCGGGGCCGGCGAGGCTGCCAGTCTAACGCCCTGGTGCCCATTCACATTGAAGTCA
CCAGCGATGAGCAGCCCCGAGCACACGTGGAGTTTTCCGACAGCGACCAGGACGGGGTTGTGTCCGACCA
CAGTGACTACATTCACCTAGAGGGGTCATCCTTCTGCAGTGAAAGTGACTTTGATCACTTTTCCTTCACA
TCCTCCGAAAGCTTTTACGGATCCAGCCACCACCACCACCATCACCACCACCACCACCACCGCCACCTCA
TCAGCTCCTGCAAAGGCAGGTGCCCGGCCTCCTACACTCGATTTACCACAATGTTAAAACACGAAAGAGC
CAGACACGAAAACACCGAGGAGCCCAGAAGGCAAGAAATGGACCCTGGCCTTTCTAAACTTGCTTTTCTA
GTCAGTCCTGTGCCTTTCCGGAGGAAAAAAAATTCGGCTCCTAAGAAACAGACTGAAAAGGCAAAATGTA
AAGCATCTGTGTTTGAGGCTCTGGACTCTGCCCTTAAAGACATCTGTGACCAAATTAAAGCTGAAAAGAA
AAGGGGGAGCTTGCCGGACAACAGCATCCTGCACCGCCTCATCAGTGAGCTGCTGCCAGATGTTCCCGAG
AGGAACTCATCCCTGAGAGCGCTGAGGAGGAGCCCCCTGCACCAGCCTCTCCACCCACTGCCTCCCGATG
GTGCTATTCATTGTCCACCCTACCAGAATGACTGCGGGAGAATGCCCCGCAGTGCCTCTTTCCAAGACGT
GGACACAGCCAACAGCAGCTGCCACCACCAAGACCGTGGCGGTGCACTCCAAGACCGTGAGTCCCCTAGA
AGTTACTCATCCACTTTGACTGACATGGGGAGAAGTGCACCAAGGGAAAGAAGAGGAACTCCAGAAAAAG
AGAAATTGCCTGCAAAAGCTGTTTATGATTTTAAGGCTCAGACATCTAAGGAGTTGTCATTTAAGAAAGG
AGATACTGTCTACATCCTCAGGAAAATTGATCAAAATTGGTATGAGGGAGAACACCACGGGAGAGTGGGC
ATCTTCCCGATCTCATACGTAGAGAAACTCACACCTCCTGAGAAAGCACAGCCTGCAAGACCACCTCCGC
CAGCCCAGCCCGGAGAAATCGGAGAAGCTATAGCCAAATACAACTTCAACGCAGACACAAATGTGGAGCT
GTCACTGAGAAAGGGAGATAGAGTTATTCTTCTTAAAAGAGTTGATCAAAACTGGTATGAAGGTAAAATC
CCAGGAACCAACAGACAAGGCATCTTCCCTGTTTCCTATGTGGAGGTCGTCAAGAAGAACACAAAAGGTG
CTGAGGACTACCCTGACCCTCCAATACCCCACAGCTATTCTAGTGATAGGATTCACAGCTTGAGCTCAAA
TAAGCCACAGCGTCCTGTGTTTACTCATGAAAATATTCAAGGTGGGGGGGAACCGTTTCAGGCTCTGTAT
AACTATACTCCCAGGAATGAAGATGAGCTGGAGCTCAGAGAAAGTGATGTCATTGATGTCATGGAAAAGT
GTGATGACGGCTGGTTTGTGGGGACCTCAAGAAGAACCAAATTCTTTGGTACTTTCCCCGGAAACTACGT
CAAGAGGCTGTGA

Translation (1100 aa):
MSYYQRPFSPSAYSLPASLNSSIVMQHGTSLDSTDTYPQHAQSLDGTTSSSIPLYRSSEEEKRVTVIKAP
HYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNPPYSAQSHPA
AKTQTYRPLSKSHSDNSPNAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPR
SIFEYEPGKSSILQHERPASLYQSSIDRSLERPMSSASMASDFRKRRKSEPAVGPPRGLGDQSASRTSPG
RVDLPGSSTTLTKSFTSSSPSSPSRAKGGDDSKICPSLCSYSGLNGNPSSELDYCSTYRQHLDVPRDSPR
AISFKNGWQMARQNAEIWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKVKSESMGSLLCEEDSKESCPM
AWGSPYVPEVRSNGRSRIRHRSARNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRILQYESEQQHKDLL
RAWSQCSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDDMLSPVTLEPPQNGLCPKRRFSIEYLLEEENQ
SGPPARGRRGCQSNALVPIHIEVTSDEQPRAHVEFSDSDQDGVVSDHSDYIHLEGSSFCSESDFDHFSFT
SSESFYGSSHHHHHHHHHHHRHLISSCKGRCPASYTRFTTMLKHERARHENTEEPRRQEMDPGLSKLAFL
VSPVPFRRKKNSAPKKQTEKAKCKASVFEALDSALKDICDQIKAEKKRGSLPDNSILHRLISELLPDVPE
RNSSLRALRRSPLHQPLHPLPPDGAIHCPPYQNDCGRMPRSASFQDVDTANSSCHHQDRGGALQDRESPR
SYSSTLTDMGRSAPRERRGTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVG
IFPISYVEKLTPPEKAQPARPPPPAQPGEIGEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKI
PGTNRQGIFPVSYVEVVKKNTKGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALY
NYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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