NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30372.1 Public Mus musculus X Nap1l3 23 108 98 CCDS HistoryNCBI Gene:54561Re-query CCDS DB by CCDS ID:30372.1Re-query CCDS DB by GeneID:54561See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079490.5 ENSMUSP00000078453.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079490.5Link to Ensembl Protein Viewer:ENSMUSP00000078453.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079490Re-query CCDS DB by Protein ID:ENSMUSP00000078453
Original member Current member NCBI NM_138742.1 NP_620081.1 Accepted alive Link to Nucleotide Sequence:NM_138742.1Link to Protein Sequence:NP_620081.1Re-query CCDS DB by Nucleotide ID:NM_138742Re-query CCDS DB by Protein ID:NP_620081Link to BLAST:NP_620081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620081.1 544 Q794H2 544 100% 0 0

Chromosomal Locations for CCDS 30372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 122395385 122397019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGCAGAAGCGGATCCTAAAATGGTCACAGAACCTGGTGCCCATGGGGTTGCTGAAGAGGCGATGGCTA
GCACAGCTTGTGATTCTGGGGATGAATCTGACAGCAATAGCTCTAGCAGTACCAATAGTTGCAGCAGCAG
CGGCAGCAGCAGCAGCGGCAGCAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGT
AGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTGAGC
CTTCCAGAAGGGCCCAGCGACGTCCCTCCGGGAAACTTTTCTTGGATAAGCTGCCCCAAGCCGTAAGAAA
TCGGGTGCAGGCACTCAGAAATATTCAGAATGAGTGTGACAAGGTAGACACCTTGTTCTTAAGGGCAATT
CATGATCTTGAAAGAAAGTATGCTGAACTCAATAAGCCTCTATATGATAAGCGTTTTCAGATCATAAATG
CAGAATATGAGCCTACAGAGGAAGAATGTGAATGGAATTCAGAAGAAGAGTTCAGTGGTGATGAAGAAAT
GCAGGATGACACACCTAATGAAATGCCACCCTTAGAGGGTGAGGAGGAAGAAGAAAGCTGTAATGAAAAA
GCTGAAGTGAAGGAAGAAGGAACACATGTTCCAGAAGAAGTTCCTGAGGCAAAAGTTGAAGAAGAGGAGG
CTCCCAAAGAAACTCCTGAGGTGAAAACTGAAGAAAAAGACATTCCAAAAGAAGGTGCTGAAGAAAAAGC
TGAAGAACAGGAATCCTCTAAAGAAATTCCTGAGGTAAAAGGTGAAGAAAAAGCAGACTCTACGGATTGT
ATAGATATAGCTCCTGAAGAAAAAGAAGACGTCAAAGAAGTTACCCAGGCAAATACAGAAAATAAGGATC
AACCTACAGAAGAATTTACACCAAGGGCTCCAGCAAGAGAGGCTCAAAAAAGGGTCCCTGAGACAAGGCC
TGAAGAAGGAGTCAATATTAAAAGGGCTCGAAAGGGAAAACCTAAGAAAGAAGATCCTAAAGGTATTCCT
GACTACTGGCTGACTGTTTTAAAGAATGTTGATAAGCTTGGGCCTATGATTCAAAAGTGTGATGAACCCA
TTTTGAAGTTCTTATCTGATGTGAGCCTGAAGTTCTCAAACCCTGGCCAGCCTATTGGTTACACTTTTGA
ATTTCATTTCCTACCTAACCCATACTTCAGAAATGAGCTCCTGATGAAGACATACATAATAAGGTCAAAA
CCAGATCACTACGACCCGTTCTTCGCGTGGGGATGGGAAATTGAAGAGTGTAAAGGCTGCAAAATAGACT
GGAGACGAGGAAAAGATGTTACGGTGACAACCACCCGGAGTCGCCCTGGTATTACAGGGGAAATTGAAGT
CCAGCCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTCTTCAGTCCTCCTGAGATTCCTTTGATTGGG
AAGCTGGAACCAAGAGAAGATGCTATCCTTGATGAGGACTTTGAGATTGGTCAAATTTTGCATGATAATG
TCATCTTGAAGTCAATCTATTACTTCACAGGAGAAATCAATGATCCCTACTACCATGACTTCAGGGATTA
TGGAAATAGGAAGTACTACAAGTAG

Translation (544 aa):
MAEADPKMVTEPGAHGVAEEAMASTACDSGDESDSNSSSSTNSCSSSGSSSSGSSSSSSSSSSSSSSSSS
SSSGSSGSSSNGSHLNRKKRVPEPSRRAQRRPSGKLFLDKLPQAVRNRVQALRNIQNECDKVDTLFLRAI
HDLERKYAELNKPLYDKRFQIINAEYEPTEEECEWNSEEEFSGDEEMQDDTPNEMPPLEGEEEEESCNEK
AEVKEEGTHVPEEVPEAKVEEEEAPKETPEVKTEEKDIPKEGAEEKAEEQESSKEIPEVKGEEKADSTDC
IDIAPEEKEDVKEVTQANTENKDQPTEEFTPRAPAREAQKRVPETRPEEGVNIKRARKGKPKKEDPKGIP
DYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNPYFRNELLMKTYIIRSK
PDHYDPFFAWGWEIEECKGCKIDWRRGKDVTVTTTRSRPGITGEIEVQPRVVPNASFFNFFSPPEIPLIG
KLEPREDAILDEDFEIGQILHDNVILKSIYYFTGEINDPYYHDFRDYGNRKYYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH