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Report for CCDS13978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13978.1 Public Homo sapiens 22 SUN2 24 110 108 CCDS HistoryNCBI Gene:25777Re-query CCDS DB by CCDS ID:13978.1Re-query CCDS DB by GeneID:25777See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406622.5 ENSP00000383992.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406622.5Link to Ensembl Protein Viewer:ENSP00000383992.1Re-query CCDS DB by Nucleotide ID:ENST00000406622Re-query CCDS DB by Protein ID:ENSP00000383992
Original member Current member EBI ENST00000405510.5 ENSP00000385740.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405510.5Link to Ensembl Protein Viewer:ENSP00000385740.1Re-query CCDS DB by Nucleotide ID:ENST00000405510Re-query CCDS DB by Protein ID:ENSP00000385740
Original member Current member EBI ENST00000689035.1 ENSP00000508608.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000689035.1Link to Ensembl Protein Viewer:ENSP00000508608.1Re-query CCDS DB by Nucleotide ID:ENST00000689035Re-query CCDS DB by Protein ID:ENSP00000508608
Original member Current member NCBI NM_001199580.2 NP_001186509.1 Accepted alive Link to Nucleotide Sequence:NM_001199580.2Link to Protein Sequence:NP_001186509.1Re-query CCDS DB by Nucleotide ID:NM_001199580Re-query CCDS DB by Protein ID:NP_001186509Link to BLAST:NP_001186509.1
Original member Current member NCBI NM_001394432.1 NP_001381361.1 Accepted alive Link to Nucleotide Sequence:NM_001394432.1Link to Protein Sequence:NP_001381361.1Re-query CCDS DB by Nucleotide ID:NM_001394432Re-query CCDS DB by Protein ID:NP_001381361Link to BLAST:NP_001381361.1
Original member Current member NCBI NM_001394433.1 NP_001381362.1 Accepted alive Link to Nucleotide Sequence:NM_001394433.1Link to Protein Sequence:NP_001381362.1Re-query CCDS DB by Nucleotide ID:NM_001394433Re-query CCDS DB by Protein ID:NP_001381362Link to BLAST:NP_001381362.1
Original member Current member NCBI NM_001394434.1 NP_001381363.1 Accepted alive Link to Nucleotide Sequence:NM_001394434.1Link to Protein Sequence:NP_001381363.1Re-query CCDS DB by Nucleotide ID:NM_001394434Re-query CCDS DB by Protein ID:NP_001381363Link to BLAST:NP_001381363.1
Original member Current member NCBI NM_001394435.1 NP_001381364.1 Accepted alive Link to Nucleotide Sequence:NM_001394435.1Link to Protein Sequence:NP_001381364.1Re-query CCDS DB by Nucleotide ID:NM_001394435Re-query CCDS DB by Protein ID:NP_001381364Link to BLAST:NP_001381364.1
Original member Current member NCBI NM_015374.3 NP_056189.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015374.3Link to Protein Sequence:NP_056189.1Re-query CCDS DB by Nucleotide ID:NM_015374Re-query CCDS DB by Protein ID:NP_056189Link to BLAST:NP_056189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186509.1 717 Q9UH99-1 717 100% 0 0
NP_001381361.1 717 Q9UH99-1 717 100% 0 0
NP_001381362.1 717 Q9UH99-1 717 100% 0 0
NP_001381363.1 717 Q9UH99-1 717 100% 0 0
NP_001381364.1 717 Q9UH99-1 717 100% 0 0
NP_056189.1 717 Q9UH99-1 717 100% 0 0

Chromosomal Locations for CCDS 13978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38736267 38736380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38738173 38738265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38738587 38738754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38738873 38738988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38739342 38739426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38739722 38739943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38740267 38740432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38741007 38741050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38741494 38741571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38742301 38742555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38745684 38745811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38748713 38748783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38749766 38749859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38750225 38750320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38750898 38751035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38751210 38751373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38752507 38752628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGTCCCGAAGAAGCCAGCGCCTCACGCGCTACTCCCAGGGTGACGATGACGGCAGCAGCAGCAGCGGAG
GGAGCTCGGTGGCTGGGAGTCAGAGCACCCTGTTTAAAGACAGTCCTCTCAGGACCTTGAAGAGGAAATC
CAGCAACATGAAGCGCCTGTCCCCAGCGCCACAGCTGGGCCCGTCCTCTGATGCACACACCTCCTACTAC
AGTGAGTCGCTGGTCCACGAGTCCTGGTTCCCACCCAGGAGCTCCCTGGAGGAACTGCATGGTGACGCCA
ACTGGGGTGAGGACCTGCGGGTGCGGAGGAGGAGAGGCACGGGTGGCTCAGAGAGCAGCAGGGCCAGCGG
GCTTGTGGGGCGCAAGGCCACCGAGGACTTCCTGGGCTCTTCCTCGGGCTACTCCTCTGAGGACGACTAC
GTGGGCTACTCGGATGTGGACCAGCAGAGTTCCAGCTCGCGGCTCCGAAGCGCCGTCTCACGGGCGGGCT
CCTTACTCTGGATGGTGGCCACTTCGCCAGGCCGGCTCTTCAGACTTCTCTACTGGTGGGCTGGCACCAC
CTGGTACCGCCTGACCACAGCTGCCTCCCTCCTTGACGTCTTCGTTTTAACCAGGCGCTTCTCGTCCCTG
AAGACGTTCCTCTGGTTCCTGCTGCCGCTGCTCTTGCTGACGTGCCTGACGTATGGTGCTTGGTATTTCT
ACCCCTATGGGCTGCAGACATTCCACCCTGCTTTGGTTTCCTGGTGGGCAGCGAAGGACAGCAGGAGGCC
GGATGAGGGCTGGGAAGCCAGAGACTCATCGCCACATTTCCAGGCTGAGCAGCGTGTTATGTCCCGGGTA
CACTCTCTGGAGCGGCGTCTGGAAGCTCTTGCTGCTGAATTTTCCTCCAACTGGCAGAAGGAGGCCATGC
GGCTGGAACGTCTGGAGCTGCGGCAAGGGGCTCCTGGCCAGGGAGGTGGTGGTGGCCTGAGCCACGAGGA
CACCCTGGCGCTGCTGGAGGGGCTAGTGAGCCGCCGTGAAGCTGCCCTGAAGGAGGATTTCCGCAGGGAA
ACTGCTGCTCGCATCCAGGAAGAACTGTCTGCCCTGAGAGCAGAGCATCAGCAAGACTCAGAAGACCTCT
TCAAGAAGATCGTCCGGGCCTCCCAGGAGTCCGAGGCTCGCATCCAGCAGCTGAAGTCAGAGTGGCAAAG
CATGACCCAGGAGTCCTTCCAGGAGAGCTCTGTGAAGGAGCTGAGGCGGCTGGAGGACCAGCTGGCCGGC
CTGCAGCAGGAGCTGGCGGCTCTGGCACTGAAGCAGAGCTCGGTGGCGGAAGAAGTGGGCCTGCTGCCCC
AGCAGATCCAGGCCGTGCGGGACGACGTGGAATCTCAGTTCCCGGCCTGGATCAGTCAGTTCCTTGCCCG
AGGTGGAGGGGGCCGCGTGGGGCTCCTTCAGAGAGAGGAGATGCAAGCTCAGCTGCGAGAGCTGGAGAGC
AAGATCCTCACCCATGTGGCAGAGATGCAGGGCAAGTCGGCCAGGGAAGCCGCGGCCTCCCTGAGCCTGA
CGCTGCAGAAAGAAGGTGTGATTGGAGTGACAGAGGAGCAGGTGCACCACATCGTGAAGCAGGCCCTGCA
GCGCTACAGTGAGGACCGCATCGGGCTGGCAGACTACGCCCTGGAGTCAGGAGGGGCCAGCGTCATCAGC
ACCCGATGTTCTGAGACCTACGAGACCAAGACGGCCCTCCTCAGCCTCTTCGGCATCCCCCTGTGGTACC
ACTCCCAGTCACCCCGAGTCATCCTCCAGCCAGATGTGCACCCAGGCAACTGCTGGGCCTTCCAGGGGCC
ACAAGGCTTCGCCGTGGTCCGCCTCTCTGCCCGCATCCGCCCCACAGCCGTTACCTTAGAGCATGTGCCC
AAGGCCTTGTCACCCAACAGCACTATCTCCAGTGCCCCCAAGGACTTCGCCATCTTTGGGTTTGACGAAG
ACCTGCAGCAGGAGGGGACACTCCTTGGCAAGTTCACTTACGATCAGGACGGCGAGCCTATTCAGACGTT
TCACTTTCAGGCCCCTACGATGGCCACGTACCAGGTGGTGGAGCTGCGGATCCTGACTAACTGGGGCCAC
CCCGAGTACACCTGCATCTACCGCTTCAGAGTGCATGGGGAGCCCGCCCACTAG

Translation (717 aa):
MSRRSQRLTRYSQGDDDGSSSSGGSSVAGSQSTLFKDSPLRTLKRKSSNMKRLSPAPQLGPSSDAHTSYY
SESLVHESWFPPRSSLEELHGDANWGEDLRVRRRRGTGGSESSRASGLVGRKATEDFLGSSSGYSSEDDY
VGYSDVDQQSSSSRLRSAVSRAGSLLWMVATSPGRLFRLLYWWAGTTWYRLTTAASLLDVFVLTRRFSSL
KTFLWFLLPLLLLTCLTYGAWYFYPYGLQTFHPALVSWWAAKDSRRPDEGWEARDSSPHFQAEQRVMSRV
HSLERRLEALAAEFSSNWQKEAMRLERLELRQGAPGQGGGGGLSHEDTLALLEGLVSRREAALKEDFRRE
TAARIQEELSALRAEHQQDSEDLFKKIVRASQESEARIQQLKSEWQSMTQESFQESSVKELRRLEDQLAG
LQQELAALALKQSSVAEEVGLLPQQIQAVRDDVESQFPAWISQFLARGGGGRVGLLQREEMQAQLRELES
KILTHVAEMQGKSAREAAASLSLTLQKEGVIGVTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVIS
TRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVP
KALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGH
PEYTCIYRFRVHGEPAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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