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Report for CCDS82225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82225.1 Public Homo sapiens 17 GPS1 24 110 108 CCDS HistoryNCBI Gene:2873Re-query CCDS DB by CCDS ID:82225.1Re-query CCDS DB by GeneID:2873See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000624957.3 ENSP00000485641.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000624957.3Link to Ensembl Protein Viewer:ENSP00000485641.1Re-query CCDS DB by Nucleotide ID:ENST00000624957Re-query CCDS DB by Protein ID:ENSP00000485641
Original member Current member NCBI NM_001330541.3 NP_001317470.1 Accepted alive Link to Nucleotide Sequence:NM_001330541.3Link to Protein Sequence:NP_001317470.1Re-query CCDS DB by Nucleotide ID:NM_001330541Re-query CCDS DB by Protein ID:NP_001317470Link to BLAST:NP_001317470.1

Chromosomal Locations for CCDS 82225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82051932 82051964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053274 82053366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053868 82054049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054498 82054810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054898 82054975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055165 82055222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055740 82055825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056001 82056095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056286 82056391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056470 82056550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056629 82056766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056840 82056974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82057053 82057127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCCGCTGCCGGTTCAGGTGTTTAACTTGCAGGGGGCCGTGGAGCCCATGCAGATCGACGTGGACCCCC
AG
GAAGACCCGCAGAATGCACCTGACGTCAACTACGTGGTGGAGAACCCCAGCCTGGATCTGGAACAGTA
C
GCGGCCAGCTACAGCGGCCTGATGCGCATCGAACGGCTGCAGTTCATTGCTGATCACTGCCCCACGCTG
CGG
GTGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCAGAGAACCTTTAACGTGGACATGTACGAGGAGA
TC
CACCGCAAGCTCTCAGAGGCCACCAGGTCCTCTCTCAGGGAGCTGCAGAACGCACCCGACGCCATCCC
T
GAGAGCGGCGTGGAGCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGAAGAAGGCGCTGCTG
AAG
CTGGAGAAGCTGGACACAGACCTGAAGAACTACAAGGGCAACTCCATCAAAGAGAGCATCCGGCGCG
GC
CACGACGACCTGGGCGACCACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGCTATTCCCG
G
GCCCGGGACTACTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCAGCGTC
TAC
TTGCAGAATTGGTCTCATGTGCTCAGCTACGTCAGCAAGGCTGAGTCCACCCCAGAGATTGCCGAGC
GA
GGAGAGCGTGACAGCCAGACCCAGGCCATCCTCACCAAGCTCAAGTGTGCCGCAGGCTTGGCAGAGCT
G
GCCGCCAGGAAGTACAAGCAGGCTGCCAAGTGCCTCCTGCTGGCTTCCTTTGATCACTGTGACTTCCCT
GAG
CTGCTGTCCCCCAGCAACGTGGCCATCTACGGTGGCCTGTGCGCCTTGGCTACCTTTGACCGGCAGG
AG
CTGCAGCGCAATGTCATCTCCAGCAGCTCCTTCAAGTTGTTCTTGGAGCTGGAGCCACAGGTCCGAGA
C
ATCATCTTCAAATTCTACGAGTCCAAGTACGCCTCATGTCTCAAGATGCTGGACGAGATGAAGGACAAC
CTG
CTCCTGGACATGTATCTGGCCCCCCATGTCAGGACCCTGTACACCCAGATTCGCAACCGTGCCCTCA
TC
CAGTATTTCAGCCCCTACGTGTCAGCCGACATGCATAGGATGGCGGCAGCCTTCAATACCACGGTGGC
C
GCCCTGGAGGACGAGCTGACGCAGCTAATCCTGGAGGGGCTGATCAGTGCCCGTGTGGACTCACACAGC
AAG
ATCCTATACGCCCGGGACGTGGATCAGCGCAGCACCACCTTTGAGAAGTCTCTGTTGATGGGCAAGG
AG
TTCCAGCGCCGCGCCAAGGCCATGATGCTGCGGGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTC
C
CCGCCCAGAGAAGGGAGCCAGGGGGAGCTGACTCCAGCCAACAGCCAGTCCCGGATGAGCACCAACATG
TGA


Translation (490 aa):
MPLPVQVFNLQGAVEPMQIDVDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHCPTL
R
VEALKMALSFVQRTFNVDMYEEIHRKLSEAT
RSSLRELQNAPDAIPESGVEPPALDTAWVEATRKKALL
K
LEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIK
VSV
Y
LQNWSHVLSYVSKAESTPEIAE
RGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFP
E
LLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDN
L
LLDMYLAPHVRTLYTQIRNRALIQ
YFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHS
K
ILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser