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Report for CCDS26960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26960.1 Public Mus musculus 14 Sftpa1 23 108 98 CCDS HistoryNCBI Gene:20387Re-query CCDS DB by CCDS ID:26960.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022314.9 ENSMUSP00000022314.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022314.9Link to Ensembl Protein Viewer:ENSMUSP00000022314.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022314Re-query CCDS DB by Protein ID:ENSMUSP00000022314
Original member Current member EBI ENSMUST00000170719.1 ENSMUSP00000129696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170719.1Link to Ensembl Protein Viewer:ENSMUSP00000129696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170719Re-query CCDS DB by Protein ID:ENSMUSP00000129696
Original member Current member NCBI NM_023134.5 NP_075623.2 Accepted alive Link to Nucleotide Sequence:NM_023134.5Link to Protein Sequence:NP_075623.2Re-query CCDS DB by Nucleotide ID:NM_023134Re-query CCDS DB by Protein ID:NP_075623Link to BLAST:NP_075623.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075623.2 248 P35242 248 99.5968% 0 1

Chromosomal Locations for CCDS 26960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 41132458 41132629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41132822 41132941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41133638 41133715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41134070 41134446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTCACTAGGCTCTTTGGCCTTCACCCTCTTCTTGACTGTTGTTGCTGGCATCAAGTGCAATGGGACAG
AAGTTTGTGCCGGAAGCCCTGGGATCCCTGGCACTCCCGGAAACCATGGTTTGCCCGGCAGAGATGGGAG
AGATGGTATCAAAGGAGACCCTGGACCTCCAGGTCCCATGGGCCCTCCTGGAGGAATGCCAGGTCTTCCT
GGGCGCGATGGGCTGCCTGGAGCCCCTGGTGCACCTGGAGAACATGGAGACAAGGGAGAGCCTGGAGAAA
GGGGGCTTCCAGGGTTTCCAGCTTACCTGGATGAGGAGCTTCAGACTGCACTCTACGAGATCAAACATCA
GATTCTGCAAACAATGGGAGTCCTCAGCTTGCAAGGATCCATGCTGTCAGTGGGGGATAAAGTCTTTTCC
ACCAATGGGCAGTCAGTCAACTTTGATACCATTAGAGAGATGTGTACCAGAGCCGGTGGCCACATTGCTG
CCCCGAGGAATCCTGAGGAGAACGAGGCCATCGCAAGCATTACAAAGAAGTACAACACCTATCCCTACTT
AGGTGTGATTGAAGGCCAGACTCCTGGAGACTTCCACTACCTGGATGGGGCTTCTGTGAACTACACCAAC
TGGTACCCAGGAGAGCCCAGGGGTCGGGGCAAAGAGAAATGTGTAGAAATGTATACAGATGGGAAATGGA
ATGATAAGGGCTGCCTGCAGTACCGGCTGGCCATTTGTGAATTTTGA

Translation (248 aa):
MSLGSLAFTLFLTVVAGIKCNGTEVCAGSPGIPGTPGNHGLPGRDGRDGIKGDPGPPGPMGPPGGMPGLP
GRDGLPGAPGAPGEHGDKGEPGERGLPGFPAYLDEELQTALYEIKHQILQTMGVLSLQGSMLSVGDKVFS
TNGQSVNFDTIREMCTRAGGHIAAPRNPEENEAIASITKKYNTYPYLGVIEGQTPGDFHYLDGASVNYTN
WYPGEPRGRGKEKCVEMYTDGKWNDKGCLQYRLAICEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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