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Report for CCDS46338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46338.1 Public Homo sapiens 2 C2orf78 24 110 108 CCDS HistoryNCBI Gene:388960Re-query CCDS DB by CCDS ID:46338.1Re-query CCDS DB by GeneID:388960See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409561.2 ENSP00000387124.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409561.2Link to Ensembl Protein Viewer:ENSP00000387124.1Re-query CCDS DB by Nucleotide ID:ENST00000409561Re-query CCDS DB by Protein ID:ENSP00000387124
Original member Current member NCBI NM_001080474.3 NP_001073943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080474.3Link to Protein Sequence:NP_001073943.1Re-query CCDS DB by Nucleotide ID:NM_001080474Re-query CCDS DB by Protein ID:NP_001073943Link to BLAST:NP_001073943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073943.1 922 A6NCI8 922 100% 0 0

Chromosomal Locations for CCDS 46338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73784310 73784406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73813477 73814226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73815071 73816992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGCACTGGTTGGCTTCAGCCACCCAGACATCCGCTAGTATCGTCTCTTCTTCCCTTCTATCTGCAGTTG
ATGTTTCTTCTTCTCTGACCATGTCAGAATATTTCCAAAATACGTCTTTACCTGGAACTGCAAATTCTCG
GCAGTTCTCTCTTCCTGTGGTGAGCAATGCAGCTTTCTTAACAGGAAGCATCTCCAACTTCTCCAGAGCC
TCTGCTCCAGCCATCAGCTCAGCATGGCTACAGCCATCAGCCTCTGGCACCTCCTTCCAGCCACTCATGG
GCAGTGCCTACCTTTACCAACATTCTAGCACAACTATGTTGTCTGGGGTTACTGGCCAGAGCCATATCTG
TACTTCAGCTGCCTCTTATCCAGGCGTTTTTGAGTGGGATAGTACAGCAAGCACAGTAAAGAAGTCATCC
TCACTCAGGGACTTCACTGTGACTGTCATTGATCAGAACACAGCTGTCTCTTCCATGTCTATGACAGCCC
AGTATTATAAAACTTCAGATACCAATACTATGGTCCCTCTGTATCCATCACTATCTGCCAGCCTTGTTCA
GGGGACACTAACTCAAATTCCAAATCAGCAGGGCCATAACCTGTCACTTCCCTGCCAGATAGGAAGCCAG
GTCTATTACTATAATCAAGGCACACTGGGGCCTCAACTATCCTGCCTGCAATCTTATGGCTCTGTGTCAT
ACACAGGATATAGGGCTTCTGCCCATCAACCAGAAATGGTGATGGTGCTGAAGGAGGTTCAGCCCACAAA
TGTCCTACCACCAGTCTCTACTTCTGGGATGTATTACTCTGTGTCTTCTCAACCCATCACAGAAACCAGT
GTTCAAGTGATGGAAACTTCCCTGGGGATGGATACTTCCCTGGGATTGCAATCTCCAAGCCAGACATTTT
GTCTGCCACAAACTCCAGAATTCTCCAAGTCCTTCAGTAGCAGAAATACCCAGACACTTGAGAGTAACCC
ATCACCTGAGCTTGGGGACATTTCAATAACTCCAGTCCAGAGTCCTACTAATCTCTTGACACTGTCTCCA
GCTCCAAGCCAGGAAAAAAATGAGAATGAGAATTTGGATGAGATTAAAACCAACCTTTCAAAGCCTCTAG
ATGTCCACCAGATCCTAATAGGAAATCAAGATCCTCCACTACTTCCTGTAGAAATCCCCGATATTCACCC
GCTTCTGGCCTGCATTGATCCTCTTGGCCAAGAGGAGCAGCCTGGTTCTGAAAATGCCAATCTAAGAAAT
AAGAGCCTGAGTCTTGAGGACCAAGGGATATTTGAAAATGGGATTGAGTCTAGCAGTGATTTGGCAGACA
TCACTACATGGGTGGAGGATACTTACCTCCCCCCGATCTTCAGTTCCTTACAAGATCTTGACCAACCTGA
AAGTCCCTCAGCAAAGAAAGCCAAAGATACCAGTGCCATCAAGGTAAATCAGGTGCAGGAAAAGTCATGT
GTCATAAAGGGTCACTCTGATCAAGTCAGGAAGAACAAGCATAAAGCTTCCGAGCCTATCCAGGGTGCTC
CCAAGGCCAAAATCCAGCCAAAGAACCCAGAGTGCCTATTAGAGAGAGAAGTGGTTGTTGGCAGTGCTAC
AGTCAGTAACAGCGCTTCTGTGAACAAGGCCAAGCATTCTAGCAACAAACCTCACAAGGCTGCATCCAGC
AGGATCAGCAAAACTAAGAGCCATGGGCAGGAAAAGACCAAAGGGAACAGAAAGAACAGCTCCAAGAAAT
CTGAAGAGAGTAAGCAGTCAGGGAAAAAAGTCAAGGTAGAAGAGAAGCAAACCATTCCCAATATGAAACG
GAAGAAAAATCAACCTGAGCTTAGCCAAAAGACCCTTAAAAAGCCCCGAAGCTCCCTAGGCATGCACATG
CTAGAGTCCGTGCAAGTTTTCCATGCACTCGGGAAAAAGATCGATATGAAAACTGGATTCTCTTCCTCCA
GGACCCTGGGAAGCTCAAGCAACACCCAAAACCGCCAGCCATTCCCAGCTCTCAAACCATGGCTGGATAT
CCAACATGAGGGTAAAGGCCCGGAGAAAATTCAAGTCAAGGCCCAGAAACTAGATGGTAGTGCTGAAAAA
GAGTGTACATCTCCATCCCACTCTGAGTTGCCACCACCTGGGAAGGTCAAGTTGATACCTTTGCCCTTTC
TGACCCTGGACCAACCTCAAGCTCGACATGTTTCTCGGCGGCCAAACCCTCTAGCCTCACGTAGGCCTGC
TGTGGCTTACCCTGCTCGACCTGATTCTACTAACTCAGCTCAATCGAATGCAGTCAATCCATCCCGACCA
GCTCCTACCAACACATCTTTGACAGGTCCTGCCACACCAGCTCAGCCAATTTCAGCCAAAGCAACCCAAC
CCAGTTCAGCCAACCCTACCCAGCCTACTGTCCCTCAATCTGCTGCTTCTAGGCCATCAGCCTACAAAAC
ATCATCTTGTTCTTCTCTGCAGCGGGAGCCTGTTTCCACTGCTGTGACCAGTCTCCGGTCACTGCCCAAG
CCTCAAAATCAATTTCTAATCCAAGACTTCAGCCTCCAACCCCGTCCATGGAGGAAACCCACTGTTCCTG
AGCCAGTAATGTCAACGCCCATCACAGAAGAGCAGAGGCCAGAGCGTGAGGCCATGAAGAGAAAGGCTCA
ACAAGAGCGTGAGAATGCTGCCAAATACACCTCTTTGGGGAAAGTGCAGTTTTTCATTGAAAGGGAAAGA
GATATGGAAATTGCTGAATACTATGGCTACACAATCTAA

Translation (922 aa):
MHWLASATQTSASIVSSSLLSAVDVSSSLTMSEYFQNTSLPGTANSRQFSLPVVSNAAFLTGSISNFSRA
SAPAISSAWLQPSASGTSFQPLMGSAYLYQHSSTTMLSGVTGQSHICTSAASYPGVFEWDSTASTVKKSS
SLRDFTVTVIDQNTAVSSMSMTAQYYKTSDTNTMVPLYPSLSASLVQGTLTQIPNQQGHNLSLPCQIGSQ
VYYYNQGTLGPQLSCLQSYGSVSYTGYRASAHQPEMVMVLKEVQPTNVLPPVSTSGMYYSVSSQPITETS
VQVMETSLGMDTSLGLQSPSQTFCLPQTPEFSKSFSSRNTQTLESNPSPELGDISITPVQSPTNLLTLSP
APSQEKNENENLDEIKTNLSKPLDVHQILIGNQDPPLLPVEIPDIHPLLACIDPLGQEEQPGSENANLRN
KSLSLEDQGIFENGIESSSDLADITTWVEDTYLPPIFSSLQDLDQPESPSAKKAKDTSAIKVNQVQEKSC
VIKGHSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKPHKAASS
RISKTKSHGQEKTKGNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQPELSQKTLKKPRSSLGMHM
LESVQVFHALGKKIDMKTGFSSSRTLGSSSNTQNRQPFPALKPWLDIQHEGKGPEKIQVKAQKLDGSAEK
ECTSPSHSELPPPGKVKLIPLPFLTLDQPQARHVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRP
APTNTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAVTSLRSLPK
PQNQFLIQDFSLQPRPWRKPTVPEPVMSTPITEEQRPEREAMKRKAQQERENAAKYTSLGKVQFFIERER
DMEIAEYYGYTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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