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Report for CCDS20689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20689.1 Public Mus musculus 6 St8sia1 23 108 98 CCDS HistoryNCBI Gene:20449Re-query CCDS DB by CCDS ID:20689.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032421.3 ENSMUSP00000032421.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032421.3Link to Ensembl Protein Viewer:ENSMUSP00000032421.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032421Re-query CCDS DB by Protein ID:ENSMUSP00000032421
Original member Current member NCBI NM_011374.2 NP_035504.2 Accepted alive Link to Nucleotide Sequence:NM_011374.2Link to Protein Sequence:NP_035504.2Re-query CCDS DB by Nucleotide ID:NM_011374Re-query CCDS DB by Protein ID:NP_035504Link to BLAST:NP_035504.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035504.2 355 Q64687 355 100% 0 0

Chromosomal Locations for CCDS 20689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142828784 142829270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142867854 142867946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142876648 142876757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142914024 142914168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142963536 142963768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGAGCCCCTGCGGGCGGGCCCTACATACGTCCAGAGGGGCCATGGCCATGCTAGCTCGGAAATTCCCGC
GTACCCGGCTACCCGTAGGAGCCAGTGCCCTCTGTGTGGTGGTCCTCTGTTGGCTCTACATCTTCCCTGT
CTACCGGCTGCCCAACGAGAAGGAGATTGTGCAAGGGGTGCTGGCACAGCGGACGGCTTGGAGGACGAAC
CAGACGTCAGCCAGTCTCTTCAGGAGACAAATGGAAGACTGCTGTGACCCTGCCCATCTCTTTGCTATGA
CTAAGATGAACTCCCCCATGGGGAAGAGCCTGTGGTACGATGGGGAGCTCTTATACTCGTTCACCATCGA
TAATTCCACGTACTCCCTCTTCCCCCAGGCAACCCCCTTCCAGCTGCCATTGAAGAAATGTGCGGTGGTG
GGAAACGGTGGGATTCTGAAGATGAGTGGCTGTGGCCGTCAAATAGATGAAGCAAATTTTGTCATGCGGT
GCAACCTGCCTCCCTTGTCAAGTGAGTACACCAGAGATGTCGGTTCCAAAACTCAGTTGGTGACAGCTAA
CCCCAGCATAATTCGCCAGAGATTTGAAAACCTGCTGTGGTCCAGAAAGAAGTTTGTGGACAACATGAAG
ATCTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGCACAGAGCCGTCTCTCCGTG
TGTATTACACACTGAAAGATGTTGGAGCCAATCAAACAGTGCTTTTTGCTAACCCCAACTTTCTTCGGAA
CATTGGAAAGTTCTGGAAGAGTAGGGGGATCCACGCCAAGCGCTTGTCTACAGGACTCTTTTTGGTGAGT
GCAGCCTTGGGCCTCTGTGAGGAGGTGTCCATCTATGGCTTCTGGCCCTTCTCGGTGAACATGCAAGGGG
ACCCTATCAGTCACCACTACTATGACAACGTCTTGCCCTTCTCAGGCTACCATGCCATGCCTGAGGAATT
CCTTCAGCTTTGGTATCTTCACAAAATCGGCGCGCTGAGGATGCAGCTGGACCCGTGTGAGGAGCCGTCA
CCACAGCCCACTTCCTAG

Translation (355 aa):
MSPCGRALHTSRGAMAMLARKFPRTRLPVGASALCVVVLCWLYIFPVYRLPNEKEIVQGVLAQRTAWRTN
QTSASLFRRQMEDCCDPAHLFAMTKMNSPMGKSLWYDGELLYSFTIDNSTYSLFPQATPFQLPLKKCAVV
GNGGILKMSGCGRQIDEANFVMRCNLPPLSSEYTRDVGSKTQLVTANPSIIRQRFENLLWSRKKFVDNMK
IYNHSYIYMPAFSMKTGTEPSLRVYYTLKDVGANQTVLFANPNFLRNIGKFWKSRGIHAKRLSTGLFLVS
AALGLCEEVSIYGFWPFSVNMQGDPISHHYYDNVLPFSGYHAMPEEFLQLWYLHKIGALRMQLDPCEEPS
PQPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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