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Report for CCDS92434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92434.1 Public Homo sapiens 18 MTCL1 24 110 108 CCDS HistoryNCBI Gene:23255Re-query CCDS DB by CCDS ID:92434.1Re-query CCDS DB by GeneID:23255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 92434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517570.5 ENSP00000429556.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517570.5Link to Ensembl Protein Viewer:ENSP00000429556.1Re-query CCDS DB by Nucleotide ID:ENST00000517570Re-query CCDS DB by Protein ID:ENSP00000429556
Original member Current member NCBI NM_001395220.1 NP_001382149.1 Accepted alive Link to Nucleotide Sequence:NM_001395220.1Link to Protein Sequence:NP_001382149.1Re-query CCDS DB by Nucleotide ID:NM_001395220Re-query CCDS DB by Protein ID:NP_001382149Link to BLAST:NP_001382149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382149.1 1545 Q9Y4B5-2 1545 100% 0 0

Chromosomal Locations for CCDS 92434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 8718451 8718648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8720338 8720496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8777833 8777892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8783530 8784843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8785936 8786091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8796232 8796462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8798097 8798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8806893 8807060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8812979 8813233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8818963 8819259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8821467 8821498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8824699 8826232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8828908 8828946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4638 nt):
ATGGAAGAGATGAGAGACAGTTATTTAGAGGAAGATGTTTACCAGCTGCAGGAACTTCGGCGAGAACTGG
ACCGCGCTAATAAAAACTGCCGAATCCTGCAGTACCGTCTTCGGAAAGCCGAGCAGAAAAGCCTGAAAGT
GGCTGAGACGGGTCAGGTGGATGGTGAGCTTATTCGAAGCCTGGAGCAGGACTTGAAGGTAGCCAAAGAT
GTATCTGTCAGATTGCACCACGAACTTAAGACGGTGGAGGAAAAGCGCGCTAAAGCTGAGGATGAAAACG
AAACTCTCCGACAGCAGATGATTGAAGTGGAAATATCCAAACAGGCCCTCCAGAATGAGCTGGAGAGACT
GAAAGAGAGTTCCCTAAAAAGAAGAAGCACTCGGGAAATGTACAAGGAGAAGAAAACCTTTAACCAGGAT
GACAGTGCCGATTTGAGGTGCCAGCTCCAGTTTGCCAAAGAGGAAGCCTTCCTGATGCGCAAAAAGATGG
CCAAGCTAGGAAGGGAGAAGGACGAGCTGGAGCAGGAGCTCCAGAAGTACAAGTCCCTCTATGGGGATGT
GGACAGTCCCCTGCCCACGGGGGAAGCAGGCGGGCCCCCCAGCACCCGGGAGGCCGAGCTGAAGCTGCGG
CTAAAGCTGGTGGAGGAGGAAGCCAACATCTTGGGCCGGAAGATCGTGGAGCTGGAGGTGGAGAACCGTG
GCCTCAAGGCAGAGATGGAGGACATGCGGGGCCAGCAGGAGCGGGAGGGCCCGGGTCGGGACCACGCACC
CAGCATTCCTACCTCACCCTTCGGTGACTCCCTGGAGTCCTCCACTGAGCTCCGCCGCCACCTGCAGTTT
GTAGAAGAGGAAGCGGAGTTGCTCCGGAGGTCCATCTCCGAGATCGAAGACCACAACCGGCAACTGACCC
ACGAGCTCAGCAAGTTTAAGTTTGAGCCTCCCCGGGAGCCGGGCTGGCTAGGAGAGGGTGCAAGTCCTGG
TGCCGGGGGTGGGGCCCCCCTGCAGGAGGAGCTGAAGTCAGCCAGGCTGCAGATCAGCGAGCTCAGCGGC
AAGGTGCTCAAACTGCAGCACGAGAACCACGCGCTGCTGTCCAACATCCAGCGCTGCGACCTGGCAGCCC
ACCTGGGGCTGCGTGCCCCCAGTCCCCGGGACAGCGATGCCGAGAGTGATGCGGGCAAGAAGGAGAGTGA
TGGGGAGGAGAGCCGCCTGCCCCAGCCCAAGCGGGAAGGGCCTGTTGGCGGGGAGAGTGACTCGGAGGAA
ATGTTTGAGAAGACGTCGGGCTTCGGGAGCGGGAAGCCATCGGAGGCCAGCGAGCCATGCCCCACGGAGC
TCCTGAAGGCCCGGGAGGACTCTGAGTACCTAGTGACCCTAAAACACGAGGCCCAGCGGCTAGAGCGGAC
GGTGGAGCGCCTCATCACGGACACCGACAGCTTCCTCCATGATGCGGGGCTGCGGGGTGGTGCGCCCTTA
CCGGGGCCTGGCCTCCAGGGCGAAGAGGAGCAGGGTGAGGGGGACCAGCAGGAGCCCCAGCTGCTGGGGA
CCATCAACGCCAAGATGAAGGCTTTCAAGAAAGAGCTGCAGGCCTTCCTGGAGCAGGTGAACCGCATTGG
GGATGGCCTATCCCCCTTGCCCCACCTCACAGAGTCCTCTAGCTTCCTCTCCACTGTGACTTCCGTGTCC
CGGGACTCCCCCATCGGGAACCTGGGGAAGGAGCTGGGCCCAGACTTGCAGTCCAGACTGAAAGAGCAGC
TGGAGTGGCAGCTCGGGCCGGCCCGAGGGGACGAGCGGGAGAGCCTGCGCCTCCGAGCCGCGCGGGAGCT
GCACCGCCGCGCAGACGGGGACACCGGGAGCCACGGGCTGGGAGGCCAGACCTGCTTCAGCCTGGAGATG
GAGGAGGAGCACCTCTATGCCTTGAGGTGGAAAGAACTGGAAATGCACAGCCTGGCTTTGCAAAACACCC
TCCATGAGCGAACCTGGAGTGATGAGAAGAATCTGATGCAGCAGGAGCTCCGGTCCTTGAAGCAGAACAT
TTTCCTCTTCTACGTCAAACTCAGGTGGCTGCTGAAACACTGGCGGCAAGGGAAGCAGATGGAGGAGGAA
GGAGAGGAGTTCACTGAGGGTGAACATCCAGAGACCCTCTCCAGGCTCGGGGAGCTTGGAGTCCAGGGGG
GTCACCAGGCGGATGGCCCAGACCACGACAGTGACCGAGGCTGTGGCTTTCCAGTGGGGGAGCACTCCCC
ACACTCCCGGGTGCAGATTGGAGATCACAGCTTGCGGCTGCAGACCGCGGACAGGGGACAGCCCCACAAA
CAGGTGGTGGAAAACCAGCAGCTGTTCAGCGCCTTCAAGGCCTTGCTGGAGGACTTCCGTGCGGAGCTGC
GGGAGGATGAGCGTGCCCGACTACGGCTGCAGCAGCAATATGCCAGCGACAAGGCGGCCTGGGACGTGGA
GTGGGCCGTGCTCAAGTGCCGTCTGGAACAGCTGGAAGAGAAGACTGAGAACAAGTTGGGAGAACTAGGC
TCCTCCGCTGAGAGCAAGGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAGAAGCTCCTGGCAGACAGTC
ACAGCCTGGTCATGGACCTGCGCTGGCAGATCCATCACAGCGAGAAGAACTGGAACCGGGAGAAGGTGGA
ACTTCTCGACCGCCTGGACAGAGATCGGCAGGAGTGGGAGCGGCAGAAGAAGGAATTCTTGTGGAGGATA
GAGCAGTTGCAGAAAGAGAACAGTCCCCGGAGAGGTGGCAGTTTCCTCTGTGATCAAAAAGACGGCAACG
TTCGCCCCTTTCCCCACCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGCCTTGTGCAGATGC
TGACTCCATCCCGTTTGAAGACCGGCCGCTGTCCAAGCTGAAGGAGTCGGACAGGTGCTCGGCCAGTGAG
AATCTCTACCTGGATGCCTTGTCCCTGGATGACGAGCCAGAAGAGCCACCAGCCCACAGGCCCGAGAGGG
AGTTCAGGAACCGCCTCCCTGAGGAAGAAGAAAATCACAAAGGAAATCTTCAAAGGGCGGTGTCCGTGTC
CTCCATGTCTGAGTTCCAGCGTCTAATGGACATCTCCCCCTTCCTGCCTGAGAAGGGCCTGCCGTCCACC
AGCAGCAAGGAGGATGTCACCCCACCCCTGTCTCCAGACGACCTCAAGTACATCGAGGAGTTCAACAAGA
GCTGGGACTACACACCCAACAGGGGCCACAATGGTGGGGGGCCGGACCTTTGGGCCGACAGGACCGAGGT
GGGGCGGGCAGGGCACGAGGACAGCACAGAGCCTTTCCCCGACTCCTCCTGGTACCTAACCACAAGTGTC
ACCATGACCACGGACACCATGACCAGCCCAGAGCACTGCCAGAAGCAGCCACTGCGGAGCCACGTCCTCA
CCGAGCAGTCGGGGTTGCGCGTGTTACACAGCCCGCCTGCCGTGCGCAGGGTCGACAGCATCACGGCGGC
AGGTGGTGAGGGTCCCTTTCCCACAAGCAGAGCCAGAGGGAGCCCGGGAGACACCAAGGGAGGCCCTCCA
GAACCCATGCTCAGCAGGTGGCCTTGCACCTCCCCCAGGCACTCCCGGGACTATGTGGAGGGGGCACGGC
GCCCCCTTGATAGTCCCCTCTGTACCTCCCTGGGGTTTGCCTCCCCACTGCACAGCCTGGAGATGTCCAA
GAACTTGAGTGATGACATGAAGGAGGTGGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGAG
CTGCAAGTCAAGGACATGGCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCA
TCAGTGTGGGCTTGCAGACTGAAGCCCTGCGTGGCAGCGGTGTCACCAGCAGCCCCCACAAGTGTCTCAC
TCCAAAGGCTGGGGGCGGTGCTACACCCGTGTCGTCTCCTTCCCGGAGCCTTAGGAGCAGACAGGTGGCC
CCTGCCATCGAGAAGGTGCAGGCCAAGTTTGAACGCACATGCTGCTCCCCCAAGTATGGTTCTCCCAAGC
TGCAGAGGAAGCCCCTCCCCAAAGCCGACCAGCCAAATAACAGGACGTCACCAGGGATGGCCCAGAAAGG
GTACAGTGAGTCAGCCTGGGCCCGCTCCACCACCACAAGGGAGAGCCCCGTGCACACCACCATTAATGAT
GGCCTCTCCAGCCTCTTCAACATCATTGACCACAGCCCCGTGGTGCAGGACCCCTTCCAGAAGGGGCTGC
GGGCCGGCAGTCGGTCTCGCTCAGCAGAGCCCCGACCAGAGCTGGGCCCAGGCCAGGAAACAGGCACCAA
TTCCCGAGGAAGGTCGCCTAGCCCCATTGGGGTGGGGTCAGAGATGTGCAGGGAGGAAGGGGGAGAGGGC
ACGCCAGTGAAGCAGGACTTATCTGCTCCCCCTGGCTACACGCTCACTGAGAACGTGGCCCGGATCCTCA
ACAAGAAGCTGCTGGAACATGCCTTAAAGGAGGAGAGGAGGCAGGCTGCCCACGGGCCCCCGGGTCTCCA
CAGTGACAGCCACTCGCTGGGGGACACAGCCGAGCCAGGGCCCATGGAGAACCAAACTGTCTTGCTAACT
GCCCCCTGGGGACTCTAG

Translation (1545 aa):
MEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVAKD
VSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREMYKEKKTFNQD
DSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELKLR
LKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLESSTELRRHLQF
VEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKSARLQISELSG
KVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREGPVGGESDSEE
MFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLHDAGLRGGAPL
PGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESSSFLSTVTSVS
RDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGLGGQTCFSLEM
EEEHLYALRWKELEMHSLALQNTLHERTWSDEKNLMQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEE
GEEFTEGEHPETLSRLGELGVQGGHQADGPDHDSDRGCGFPVGEHSPHSRVQIGDHSLRLQTADRGQPHK
QVVENQQLFSAFKALLEDFRAELREDERARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELG
SSAESKGALKKEREVHQKLLADSHSLVMDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRI
EQLQKENSPRRGGSFLCDQKDGNVRPFPHQGSLRMPRPVAMWPCADADSIPFEDRPLSKLKESDRCSASE
NLYLDALSLDDEPEEPPAHRPEREFRNRLPEEEENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPST
SSKEDVTPPLSPDDLKYIEEFNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPFPDSSWYLTTSV
TMTTDTMTSPEHCQKQPLRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEGPFPTSRARGSPGDTKGGPP
EPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNLSDDMKEVAFSVRNAICSGPGE
LQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVTSSPHKCLTPKAGGGATPVSSPSRSLRSRQVA
PAIEKVQAKFERTCCSPKYGSPKLQRKPLPKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTIND
GLSSLFNIIDHSPVVQDPFQKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEG
TPVKQDLSAPPGYTLTENVARILNKKLLEHALKEERRQAAHGPPGLHSDSHSLGDTAEPGPMENQTVLLT
APWGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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