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Report for CCDS49536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49536.1 Public Mus musculus 14 Slc39a14 23 108 98 CCDS HistoryNCBI Gene:213053Re-query CCDS DB by CCDS ID:49536.1Re-query CCDS DB by GeneID:213053See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022688.9 ENSMUSP00000022688.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022688.9Link to Ensembl Protein Viewer:ENSMUSP00000022688.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022688Re-query CCDS DB by Protein ID:ENSMUSP00000022688
Original member Current member EBI ENSMUST00000152067.7 ENSMUSP00000119040.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152067.7Link to Ensembl Protein Viewer:ENSMUSP00000119040.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152067Re-query CCDS DB by Protein ID:ENSMUSP00000119040
Original member Current member NCBI NM_001135151.1 NP_001128623.1 Accepted alive Link to Nucleotide Sequence:NM_001135151.1Link to Protein Sequence:NP_001128623.1Re-query CCDS DB by Nucleotide ID:NM_001135151Re-query CCDS DB by Protein ID:NP_001128623Link to BLAST:NP_001128623.1
Original member Current member NCBI NM_001135152.1 NP_001128624.1 Accepted alive Link to Nucleotide Sequence:NM_001135152.1Link to Protein Sequence:NP_001128624.1Re-query CCDS DB by Nucleotide ID:NM_001135152Re-query CCDS DB by Protein ID:NP_001128624Link to BLAST:NP_001128624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128623.1 489 Q75N73-3 489 100% 0 0
NP_001128624.1 489 Q75N73-3 489 100% 0 0

Chromosomal Locations for CCDS 49536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70306666 70306812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70308650 70308834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70309758 70309965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70310083 70310271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70310856 70310975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70315664 70315833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70316438 70316624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70318662 70318925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGAAGCGGCTGCACCCAGCCCTTCCAAGCTGCCTCCTGTTGGTGCTGTTTGGTATATGGAGAACTGCCC
CCCAGACTCATGCCTCGTCTGCTGGCCTGCCGCCCCTCAGTGCCACCTCCTTCCTGGAAGATCTCATGGA
CCGCTATGGAAAGAATGACAGCCTTACCCTGACACAGCTGAAGTCCCTGCTCGACCACCTGCATGTGGGA
GTGGGCCGGGATAATGTTTCCCAGCCCAAGGAAGGACCCAGGAACCTCTCCACGTGCTTTAGCTCTGGAG
ACCTCTTTGCGGCGCACAACTTGAGCGAGCGATCTCAGATCGGGGCGAGTGAGTTCCAGGAGTTCTGCCC
CACCATTCTCCAGCAGCTGGATTCCCAGGCCTGCACCTCAGAAAACCAGAAGTCTGAGGAGAATGAACAG
ACAGAGGAGGGGAAGCCAAGCGCCATTGAAGTGTGGGGCTTTGGGTTCCTCAGTGTCTCACTGATTAACC
TGGCCTCTCTCCTGGGAGTCCTGGTCCTGCCGTGCACGGAGAAAGCGTTTTTCAGCCGTGTGCTCACTTA
CTTCATCGCCCTGTCCATTGGAACGCTGCTCTCTAACGCCCTTTTCCAGCTCATCCCAGAGGCTTTTGGC
TTCAACCCTCAGGACAATTACGTCTCCAAGTCTGCAGTGGTGTTTGGGGGTTTCTACCTTTTCTTTTTCA
CAGAAAAGATCCTGAAGATGCTCTTGAAGCAGAAAAACGAGCACCATCACGGGCATAACCATTTTACCTC
CGAGACACTTCCTTCCAAGAAGGACCAGGAGGAGGGTGTGACCGAGAAGCTACAGAACGGGGACCTGGAT
CACATGATCCCTCAGCACTGCAACAGCGAGCTGGATGGCAAGGCGCCTGGCACGGACGAGAAGGTCATTG
TCAACTCCATGTCTGTGCAGGACCTGCAGGCATCCCAGAGTGCTTGCTACTGGCTCAAGGGGGTCCGCTA
CTCTGATATCGGGACCTTGGCCTGGATGATCACCCTGAGCGATGGGCTCCACAATTTCATCGATGGCCTG
GCTATTGGTGCCTCCTTCACTGTGTCTGTCTTCCAAGGCATCAGCACGTCAGTGGCCATTCTCTGTGAGG
AATTCCCTCATGAGCTGGGAGACTTCGTCATCCTGCTCAATGCTGGCATGAGCATCCAGCAGGCTCTCTT
CTTCAACTTCCTCTCTGCCTGCTGCTGCTATTTGGGTCTGGCCTTTGGCATCCTGGCTGGCAGCCACTTC
TCTGCAAACTGGATTTTTGCACTGGCTGGAGGAATGTTCTTGTATATTGCCCTAGCCGATATGTTCCCTG
AGATGAATGAAGTCTGCCAGGAGGATGAGAAGAACGACAGCTTTCTGGTCCCCTTTGTCATCCAGAATCT
TGGCCTCCTAACCGGCTTCTCCATTATGCTGGTCCTCACAATGTATTCAGGGCAGATTCAGATCGGGTAG

Translation (489 aa):
MKRLHPALPSCLLLVLFGIWRTAPQTHASSAGLPPLSATSFLEDLMDRYGKNDSLTLTQLKSLLDHLHVG
VGRDNVSQPKEGPRNLSTCFSSGDLFAAHNLSERSQIGASEFQEFCPTILQQLDSQACTSENQKSEENEQ
TEEGKPSAIEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPEAFG
FNPQDNYVSKSAVVFGGFYLFFFTEKILKMLLKQKNEHHHGHNHFTSETLPSKKDQEEGVTEKLQNGDLD
HMIPQHCNSELDGKAPGTDEKVIVNSMSVQDLQASQSACYWLKGVRYSDIGTLAWMITLSDGLHNFIDGL
AIGASFTVSVFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSHF
SANWIFALAGGMFLYIALADMFPEMNEVCQEDEKNDSFLVPFVIQNLGLLTGFSIMLVLTMYSGQIQIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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