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Report for CCDS29393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29393.1 Public Mus musculus 19 Ighmbp2 23 108 98 CCDS HistoryNCBI Gene:20589Re-query CCDS DB by CCDS ID:29393.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025751.10 ENSMUSP00000025751.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025751.10Link to Ensembl Protein Viewer:ENSMUSP00000025751.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025751Re-query CCDS DB by Protein ID:ENSMUSP00000025751
Original member Current member NCBI NM_009212.2 NP_033238.2 Accepted alive Link to Nucleotide Sequence:NM_009212.2Link to Protein Sequence:NP_033238.2Re-query CCDS DB by Nucleotide ID:NM_009212Re-query CCDS DB by Protein ID:NP_033238Link to BLAST:NP_033238.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033238.2 993 P40694 993 99.5972% 0 4

Chromosomal Locations for CCDS 29393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3261432 3261635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3261975 3262144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3264811 3265665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3266336 3266459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3267242 3267336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3268298 3268416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3268660 3268842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3271526 3271700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3272888 3273035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3274356 3274556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3276756 3276919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3279533 3279630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3279807 3279996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3281419 3281588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3282701 3282786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGGCCTCGTCCACCGTGGAGAGTTTCGTGGCCCAGCAGCTACAGCTGCTGGAGCTGGAGCGGGACGCCG
AGGTGGAGGAGCGCAGGTCCTGGCAGGAACACAGTTCTCTGAGAGAGCTTCAGAGCCGAGGGGTGTGCTT
GCTGAAGCTTCAGGTATCCAGCCAGCGCACAGGGCTGTATGGGCAGCGGCTGGTCACCTTTGAGCCCAGG
AAGTTTGGACCTGCAGTGGTGCTTCCTAGCAACAGCTTCACCTCTGGTGATATTGTGGGTCTGTATGATA
CTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTT
TGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAAC
GATGTCACCTACAAACGCCTGAAAAAAGCACTGATGACACTGAAGAAGTACCACTCTGGGCCAGCATCCT
CCCTCATAGACATCCTGTTGGGCAGCTCCACCCCAAGTCCTGCCATGGAAATACCCCCACTCTCTTTCTA
CAACACAACTCTGGACCTTTCCCAGAAAGAAGCTGTGTCCTTTGCACTGGCCCAGAAAGAACTTGCCATC
ATCCATGGGCCTCCTGGCACTGGGAAAACCACAACTGTGGTGGAAATAATCCTTCAAGCTGTGAAGCAAG
GCTTAAAGGTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTG
CAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGAT
GCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTTG
GCAAGAACAAAAAGACGCAGGATAAGAGAGAGAAAGGTAATTTTCGAAGTGAAATTAAGCTGCTAAGGAA
GGAACTGAAGGAGAGGGAAGAAGCAGCCATAGTTCAGAGCCTCACTGCGGCAGATGTGGTTCTAGCCACC
AACACAGGTGCATCGTCTGATGGCCCTCTGAAGCTGCTGCCTGAGGACTACTTTGATGTGGTGGTGGTGG
ACGAATGTGCCCAGGCCCTAGAAGCCAGCTGCTGGATCCCCCTGCTGAAGGCCCCAAAGTGCATCCTAGC
TGGGGACCACAGACAGCTGCCACCCACCACCGTCTCTCACAGGGCGGCACTGGCTGGGCTGTCCCGCAGC
CTGATGGAGCGTCTGGCAGAGAAGCATGGTGCTGGTGTGGTGAGGATGCTGACGGTACAGTACCGAATGC
ACCAGGCCATCATGTGCTGGGCCTCGGAGGCCATGTACCACGGGCAGCTTACTTCCCATCCCTCTGTGGC
AGGACACCTCCTGAAGGACCTCCCAGGCGTGACTGACACAGAGGAGACACGTGTCCCGCTGCTGCTCATA
GACACCGCTGGCTGTGGGCTTCTGGAGCTGGAGGAGGAGGACAGCCAGTCCAAGGGAAATCCGGGCGAAG
TTCGCCTCGTCACTTTGCACATCCAGGCTCTGGTGGATGCTGGGGTCCAGGCAGGTGACATTGCCGTCAT
CGCACCCTACAACCTTCAGGTGGATCTGCTCAGACAGAGCCTCTCCAACAAGCACCCTGAGCTGGAGATT
AAGTCTGTTGATGGCTTTCAAGGCCGAGAGAAAGAGGCTGTGCTCCTGACCTTTGTCAGGTCCAATAGGA
AAGGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGT
GGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACA
GAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGG
GTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGA
TCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAGAAGCCCCCG
GGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGA
CAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATC
CCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACC
GGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCAC
AGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGT
GCAGGCACATTGCCCTGTACAGCTGGATCTGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGC
TCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAA
AGAAAAAAGAACCAAAAGGTCCAGTTATGGCTCTGCCCTGTGAGGAGGACTTCGACGCCCTGGTGTCTGC
TGTGGTGAAGGCTGACAACACCTGTAGCTTCTCCAAGTGCTCGGCCAGCACCACCACTCTGGGCCAGTTC
TGCATGCACTGTAGCCACCGCTACTGCCTCAGCCACCATCTGCCTGAAATCCACGGCTGTGGAGAAAAGG
CTCGTGCCCATGCCCGCCAGAGGATTAGCCGGGAAGGAGTGCTGTATGCAGGCAGTGGGACCAAGGACAG
GGCCCTGGACCCGGCCAAGAGGGCCCAGCTGCAGAGGAGGCTGGACAAGAAGCTGGGCGAGCTCAGCAGC
CAGAGGACAAGCAGGAAGAAGGAGAAGGAGAGGGGGACATGA

Translation (993 aa):
MASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYGQRLVTFEPR
KFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAFDESHDLQLNLDRENTYRLLKLAN
DVTYKRLKKALMTLKKYHSGPASSLIDILLGSSTPSPAMEIPPLSFYNTTLDLSQKEAVSFALAQKELAI
IHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLD
AVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLAT
NTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRS
LMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLI
DTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPELEI
KSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFT
EHGEVRTAFEYLDDIVPENYTHEGSQGHSRVPKPKCPSTSIRKPASDQESGQETRAAPRHGRRKPSEKPP
GSHVQSQHSSSANGSDRTGGPDRTEHFRATIEEFVASKESQLEFPTSLSSHDRLRVHQLAEEFGLRHDST
GEGKARHITVSRRSPASSGSVAPQPSSPPSPAQAEPEPRAEEPVTVVQAHCPVQLDLKALHLERLQRQQS
SQAQTAKGQPGGDSRPQKASQKKKKKEPKGPVMALPCEEDFDALVSAVVKADNTCSFSKCSASTTTLGQF
CMHCSHRYCLSHHLPEIHGCGEKARAHARQRISREGVLYAGSGTKDRALDPAKRAQLQRRLDKKLGELSS
QRTSRKKEKERGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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