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Report for CCDS26725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26725.1 Public Mus musculus 13 Smn1 23 108 98 CCDS HistoryNCBI Gene:20595Re-query CCDS DB by CCDS ID:26725.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022147.14 ENSMUSP00000022147.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022147.14Link to Ensembl Protein Viewer:ENSMUSP00000022147.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022147Re-query CCDS DB by Protein ID:ENSMUSP00000022147
Original member Current member NCBI NM_011420.2 NP_035550.1 Accepted alive Link to Nucleotide Sequence:NM_011420.2Link to Protein Sequence:NP_035550.1Re-query CCDS DB by Nucleotide ID:NM_011420Re-query CCDS DB by Protein ID:NP_035550Link to BLAST:NP_035550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035550.1 288 P97801 288 100% 0 0

Chromosomal Locations for CCDS 26725.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100124894 100124965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100126587 100126658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100126870 100126989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100127805 100128005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100128215 100128361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100131080 100131175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100132356 100132466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100135689 100135736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCGATGGGCAGTGGCGGAGCGGGCTCCGAGCAGGAAGATACGGTGCTGTTCCGGCGTGGCACCGGCC
AGAGTGATGATTCTGACATTTGGGATGATACAGCATTGATAAAAGCTTATGATAAAGCTGTGGCTTCCTT
TAAGCATGCTCTAAAGAACGGTGACATTTGTGAAACTCCAGATAAGCCAAAAGGCACAGCCAGAAGAAAA
CCTGCCAAGAAGAATAAAAGCCAAAAGAAGAATGCCACAACTCCCTTGAAACAGTGGAAAGTTGGTGACA
AGTGTTCTGCTGTTTGGTCAGAAGACGGCTGCATTTACCCAGCTACTATTACGTCCATTGACTTTAAGAG
AGAAACCTGTGTCGTGGTTTATACTGGATATGGAAACAGAGAGGAGCAAAACTTATCTGACCTACTTTCC
CCGACCTGTGAAGTAGCTAATAGTACAGAACAGAACACTCAGGAGAATGAAAGTCAAGTTTCCACAGACG
ACAGTGAACACTCCTCCAGATCGCTCAGAAGTAAAGCACACAGCAAGTCCAAAGCTGCTCCGTGGACCTC
ATTTCTTCCTCCACCACCCCCAATGCCAGGGTCAGGATTAGGACCAGGAAAGCCAGGTCTAAAATTCAAC
GGCCCGCCGCCGCCGCCTCCACTACCCCCTCCCCCCTTCCTGCCGTGCTGGATGCCCCCGTTCCCTTCAG
GACCACCAATAATCCCGCCACCCCCTCCCATCTCTCCCGACTGTCTGGATGACACTGATGCCCTGGGCAG
TATGCTAATCTCTTGGTACATGAGTGGCTACCACACTGGCTACTATATGGGTTTCAGACAAAATAAAAAA
GAAGGAAAGTGCTCACATACAAATTAA

Translation (288 aa):
MAMGSGGAGSEQEDTVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETPDKPKGTARRK
PAKKNKSQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNREEQNLSDLLS
PTCEVANSTEQNTQENESQVSTDDSEHSSRSLRSKAHSKSKAAPWTSFLPPPPPMPGSGLGPGKPGLKFN
GPPPPPPLPPPPFLPCWMPPFPSGPPIIPPPPPISPDCLDDTDALGSMLISWYMSGYHTGYYMGFRQNKK
EGKCSHTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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