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Report for CCDS21240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21240.1 Public Mus musculus 7 Snrnp70 23 108 98 CCDS HistoryNCBI Gene:20637Re-query CCDS DB by CCDS ID:21240.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074575.10 ENSMUSP00000074160.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074575.10Link to Ensembl Protein Viewer:ENSMUSP00000074160.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074575Re-query CCDS DB by Protein ID:ENSMUSP00000074160
Original member NCBI NM_009224.5 NP_033250.3 Updated not alive Link to Nucleotide Sequence:NM_009224.5Link to Protein Sequence:NP_033250.3Re-query CCDS DB by Nucleotide ID:NM_009224Re-query CCDS DB by Protein ID:NP_033250
Current member NCBI NM_009224.6 NP_033250.3 Accepted alive Link to Nucleotide Sequence:NM_009224.6Link to Protein Sequence:NP_033250.3Re-query CCDS DB by Nucleotide ID:NM_009224Re-query CCDS DB by Protein ID:NP_033250Link to BLAST:NP_033250.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033250.3 448 Q62376-1 448 100% 0 0

Chromosomal Locations for CCDS 21240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45376597 45377278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45377356 45377443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45380717 45380818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45383804 45383885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45387243 45387305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45387389 45387453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45392079 45392133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45392263 45392325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45394659 45394805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGACACAGTTTCTGCCTCCCAACCTTCTGGCCCTTTTTGCACCCCGAGATCCCATCCCATACCTGCCAC
CCCTGGAAAAGCTGCCACATGAAAAACACCATAACCAACCTTACTGTGGCATTGCACCATACATCCGAGA
GTTTGAGGACCCTCGAGATGCTCCTCCTCCAACAAGAGCAGAAACCCGGGAAGAACGCATGGAGAGAAAG
AGACGGGAAAAAATTGAACGGCGACAGCAGGAAGTGGAGACAGAGCTGAAAATGTGGGACCCTCACAATG
ATCCCAATGCTCAGGGCGATGCCTTCAAGACTCTGTTCGTGGCTAGAGTGAACTATGACACAACAGAATC
TAAGCTTCGGAGAGAGTTTGAGGTGTATGGACCCATCAAAAGAATCCACATGGTATACAGTAAACGCTCT
GGAAAACCCCGTGGTTATGCCTTCATCGAGTATGAGCATGAACGAGACATGCACTCCGCTTACAAGCACG
CAGATGGCAAGAAGATAGATGGCAGGAGGGTCCTCGTGGATGTGGAGAGGGGCCGGACTGTGAAGGGCTG
GAGGCCCCGGCGCCTAGGAGGTGGCCTTGGTGGTACCAGAAGAGGTGGGGCAGATGTGAATATCAGGCAT
TCGGGCCGAGATGACACTTCCCGATATGATGAGAGGCCGGGCCCCTCCCCGCTTCCACACAGAGACCGGG
ACCGGGACCGCGAGCGGGAGCGCAGAGAAAGAAGCCGAGAACGAGACAAGGAGAGAGAAAGGAGACGCTC
CCGCTCTCGGGACCGGAGGAGGCGCTCCCGGAGTCGAGACAAGGATGAGCGGCGACGGTCCAGGGAGCGT
AGCAAGGACAAGGACCGAGACCGAAAGCGACGAAGCAGTCGGAGCCGGGAGCGAGCACGCAGGGAACGGG
AGCGAAAAGAGGAGCTTCGAGGTGGAGGAGGTGGTGGCGGTGGTGGCAGTGGTGGTGGTGGCGGCGGCGA
CATGGCTGAACCCTCTGAAGCTGGTGATGGAGCTCCTGATGATGGGCCTCCTGGAGAGCTTGGCCCTGAA
GGCCCTGATGGCCCAGAGGAGAAGGGCCGGGATCGAGACCGGGAGAGGCGACGTAGTCACCGGAGTGAGA
GGGAACGTCGTCGGGACCGAGACCGTGATCGGGATCGAGAGCACAAGCGTGGGGAGCGGGGCAGTGAGCG
GGGCAGGGATGAGGCCCGGGGTGGGGGTGGCAGCGGTCAGGACAATGGGCTGGAAGGGCTAGGTAGTGAT
GGTCGAGACATGTACATGGAGGCAGAGGGTGGTGATGGGTACATGGCCCCAGAGAATGGATATCTGATGG
AGGCAGCGCCCGAATGA

Translation (448 aa):
MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK
RREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS
GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH
SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRER
SKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGDGAPDDGPPGELGPE
GPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEARGGGGSGQDNGLEGLGSD
GRDMYMEAEGGDGYMAPENGYLMEAAPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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