NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48363.1 Public Mus musculus 1 Sox13 23 108 98 CCDS HistoryNCBI Gene:20668Re-query CCDS DB by CCDS ID:48363.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094551.4 ENSMUSP00000092130.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094551.4Link to Ensembl Protein Viewer:ENSMUSP00000092130.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094551Re-query CCDS DB by Protein ID:ENSMUSP00000092130
Original member Current member EBI ENSMUST00000153799.7 ENSMUSP00000119729.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153799.7Link to Ensembl Protein Viewer:ENSMUSP00000119729.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000153799Re-query CCDS DB by Protein ID:ENSMUSP00000119729
Original member NCBI NM_011439.2 NP_035569.2 Updated not alive Link to Nucleotide Sequence:NM_011439.2Link to Protein Sequence:NP_035569.2Re-query CCDS DB by Nucleotide ID:NM_011439Re-query CCDS DB by Protein ID:NP_035569
Current member NCBI NM_011439.3 NP_035569.2 Accepted alive Link to Nucleotide Sequence:NM_011439.3Link to Protein Sequence:NP_035569.2Re-query CCDS DB by Nucleotide ID:NM_011439Re-query CCDS DB by Protein ID:NP_035569Link to BLAST:NP_035569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035569.2 613 Q04891 613 100% 0 0

Chromosomal Locations for CCDS 48363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133383651 133383924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133384457 133384673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133385466 133385609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133385994 133386090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133386185 133386294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133386766 133386928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133387084 133387166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133388449 133388563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133388929 133388997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133389324 133389496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133390559 133390645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133390729 133390840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133393073 133393270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGTCCATGCAGAGCCCCGTCTCTGTGCAGCTGGCCCCAGACAGCGCTAGCACCATGGTGAACTGCACCA
TCAAGTCTGAGGAGAAGAAGGAGCCTTGCCACGAGGCTCCCCAAGGTGCAGCCCCTGCAGTGGAGACCCA
GCCTGGAGACCCGGCCCTGGCCTCTCAGGATGCCACCAACGCTAAAGCTCCTCCTCAGGACTGTGCCTCA
CCAGAGAGCAGTGGGTCCCCAGAACCCAAGAGACCAGCAGCTTCCGAGGCTGCTTCGGGAAGCCAGGAGC
GCCTGGACTTCAACCGCAACTTACAGGAGGTTGTGCCAGCCATTGAGAAGCTGCTGTCCAGTGACTGGAA
GGAGAGGTTTCTGGGAAGAAGCAATGTGGAAGCTAAGGATGTCAAAGGGACCCAAGAGAGCCTGGCTGAG
AAGGAACTCCAGCTTTTGGTCATGATCCATCAGCTCTCTGCCCTTCGGGACCAGCTCCTTACGGCCCACT
CTGAGCAGAAGAACATGGCCGCCATGCTGTTTGAGAAGCAGCAGCAACAGATGGAACTGGCCAGGCAGCA
GCAGGAGCAGATCGCCAAGCAGCAGCAGCAGCTGATTCAACAGCAGCACAAGATCAACCTCCTGCAGCAG
CAGATCCAGCAGGTTAACATGCCTTACGTCATGATCCCAGCCTTCCCCCCAAGCCACCAGCCTTTGCCTG
TCACTCCTGACTCCCAGCTGGCTTTACCTATTCAGCCCATTCCCTGCAAGCCAGTGGAATACCCACTGCA
GCTGCTGCACAGCCCGCCTGCCCCTGTGGTGAAGAGGTCGGGGGTGGCCGCCCACCACCCCCTGCAGGAG
CCCCCACAACCACTGAACCTCACAGCCAAGCCCAAGGTACCTGAGCTGCCCAACACCTCCAGCTCTCCCA
GCCTGAAGATGAACAGTTGTGGGCCTCGCCCCGCCAGCCATGGGGCTCCCACAAGGGACCTGCAATCCAG
CCCCCCCAGCCTGCCTCTGGGCTTCCTCGGTGAAGGGGACGCCGTCACCAAAGCCATCCAGGATGCCCGG
CAGCTGCTGCACAGCCACAGTGGGGCTTTGGAAAACTCCCCCAATACCCCATTCCGGAAGGACCTCATCA
GCCTGGACTCCTCCCCGGCCAAGGAGCGGCTGGAGGAGAGCTGTGTGCATCCCCTGGAGGAAGCCATGCT
GAGCTGTGACATGGATGGCTCCCGTCATTTTTCCGAGTCTCGGAACAGCAGCCACATCAAGAGACCCATG
AATGCCTTCATGGTGTGGGCCAAGGATGAACGGAGGAAAATTCTCCAGGCCTTCCCAGACATGCATAACT
CCAGCATCAGCAAGATCCTTGGTTCTCGCTGGAAGTCCATGACCAACCAGGAGAAACAGCCGTACTACGA
GGAGCAGGCCCGTCTGAGCCGGCAGCACCTGGAGAAATACCCTGACTATAAGTACAAGCCAAGGCCTAAG
CGTACCTGTGTCGTGGAGGGCCGGCGGCTGCGAGTGGGCGAGTACAAGGCCTTGATGAGGACACGGCGCC
AGGGTGCTCGCCAAAGCTACACCATCCCCCCGCAGGCTGGCCAGGCACAGGTGAGCTCAGATATCCTGTT
CCCTCGGGCAGCGGGCTTGCCCCTGGCACGTCCACTGGTGGAGCACTATGACCCCCAGGGCCTGGACCCC
AACATGCCTGTCATCATCAATACCTGCAGTCTCCGGGAGGAAGGGGAGGGCACAGATGACAGGCACTCGG
TGGCCGATGGAGAGATGTACCGGTACAGCGAGGACGAGGACTCAGAGGGTGACGAGAAGAGTGATGAGGA
GCTGGTGGTACTCACAGACTGA

Translation (613 aa):
MSMQSPVSVQLAPDSASTMVNCTIKSEEKKEPCHEAPQGAAPAVETQPGDPALASQDATNAKAPPQDCAS
PESSGSPEPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERFLGRSNVEAKDVKGTQESLAE
KELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQ
QIQQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRSGVAAHHPLQE
PPQPLNLTAKPKVPELPNTSSSPSLKMNSCGPRPASHGAPTRDLQSSPPSLPLGFLGEGDAVTKAIQDAR
QLLHSHSGALENSPNTPFRKDLISLDSSPAKERLEESCVHPLEEAMLSCDMDGSRHFSESRNSSHIKRPM
NAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK
RTCVVEGRRLRVGEYKALMRTRRQGARQSYTIPPQAGQAQVSSDILFPRAAGLPLARPLVEHYDPQGLDP
NMPVIINTCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGDEKSDEELVVLTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH