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Report for CCDS41175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41175.1 Public Mus musculus X Fam120c 23 108 98 CCDS HistoryNCBI Gene:207375Re-query CCDS DB by CCDS ID:41175.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073364.5 ENSMUSP00000073082.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073364.5Link to Ensembl Protein Viewer:ENSMUSP00000073082.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073364Re-query CCDS DB by Protein ID:ENSMUSP00000073082
Original member Current member NCBI NM_198105.2 NP_932773.2 Accepted alive Link to Nucleotide Sequence:NM_198105.2Link to Protein Sequence:NP_932773.2Re-query CCDS DB by Nucleotide ID:NM_198105Re-query CCDS DB by Protein ID:NP_932773Link to BLAST:NP_932773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932773.2 1091 Q8C3F2-1 1091 100% 0 0

Chromosomal Locations for CCDS 41175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151344250 151344936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151376748 151376994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151381911 151381993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151399675 151399803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151428917 151429016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151429837 151429913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151430391 151430668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151431470 151431743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151432602 151432773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151436145 151436394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151457722 151457836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151463969 151464178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151465283 151465484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151467300 151467438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151467799 151467856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151469476 151469730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGGGCGTCCAGGGCTTCCAAGAGTTCCTGGAGAAGCGCTGTCCCGGGGCTGTGGTGCCTGTGGACCTCC
TCAAACTCGCGCGCACCGTCTCGCGCCAGCAGCAGCAGCAGCACCTGCACCGCCAGCTGCCGCCAGCAGC
CCTAGCGCCAGGGGCTCCACGCATCACCAGGGGCTCTGCTCCTCTGCCGCCGCCGCCGCTCCCGCCCGCT
GCCTTTGGTGCTTACTCCGGGGGCGCGGGGCCGTCTCGGCACCATCACCCTGCTCACCATTTCCACCACC
ATGGCCAAGCGCCGCCAGGGCTGCATCCGCCGCCGCCCCCTCCGCTGCCTGGGGCTCGGGTATTGGTAGA
CGCGGGCTCGGCGCTGCCGCGGCTCTATGGTGGCTACCAGACGGATTGGGTTTGTGGCGGCCAGTGGAAT
GCCATGCTGGGCTACTTGTCAGCGCTGTGCCAGGCTTGTGCCTATCCGGGCGGAGACGGCCTGGAGCTGG
TGGTCATGTTCCCTGGGGGCCTGGGGAAGGACCGACTGGCCGAGTGGGGCCGTCGGTGCCAGGCGGAGCG
GCAGACTGCGCAACTGATCGTGGGACACGTGGGCAACAAGGGCACCCCTCCACCGCGGGCCTGGTTCCTG
CCACCTGCCTGTCTGAGCCACTGCGTGAGGCTAGCACTCATCCGCTTCCGGGTCAAGGTCTTTCAGAGCC
TTGAAGACCACCATTTGGAAGTGGTGGCTTTTTTCAGAGAGAATGGCTTTCATGGTCTTCTTGCTCACGA
CTCTGAGTATGCGCTTTACAATATTCCATCTTACTACAGTTCCCATGCGCTGAAGCTGAGCTGGAATGGC
AAGAACCTTACAACCAACCAGTTCCTGATGCAGGAAGTGGCCAAGCAGCTGGGTTTGAAGCGAATGAATT
TTCCCATATTTGCTGCACTGCTTGGTAACCACATTCTACCGGATGAAGACTTGGCTGCATTTCACTGGAG
CCTTTTGGGACCAGAACATCCTCTTGCATCACTTAAGGTCCGAGCTCATCAGCTGGTTCTTCCCCCTTGT
GACGTCGTGATCAAGGCTGTTTCTGAGTATGTTAGTTCCATCAAAGACCCCTCAAACCTGGATGTGGTTG
GCAAGGATGTCTTCAAACAATCTCAGTCTAGGACAGAAGACAAAATAGAACGATTCAAGAAAGCAGTTGA
GTACTATTCAGTCACAACCAAACTCTCTTCACTGCCAGTGGGTCCTTCCTTTCTAGGCTTTCGAAATAAT
CGACTTGGAAATCCTCCCCTTCCACGGAATCAGATGGGCCCTATTTCTCCTGGAAAGCCAATGTTTTCTC
GCCAGGTGCCCCAGAAAATGAAATATCCACCACCATTTCCAATGGGACCCAACTCGTCTCTTCTCTTCTC
CCATAGTGTGGGGGAATCCCATGCTTTCTCTGAGGATGCCATGCTGCAGGACAATTCCTTTGCCAATTGG
GCTGTTTCTTATGACTCTAATACATCCCAGTTTCCTAACTGCCTGACTTCCAAAACTTCACCTCCTTTGG
GACCAGATTCTTCCCATTCCTCTTCCTCTGATGGTGACGAGGCAAATGGAGCTGGTTCTGAACAAATCAC
AGAAGCAGTTCAACAACAGCCTGGATGGGAAGATCCCAATGGTGACAGAGGGGCTTGGGGACAGCCTGCT
GATGCTGGAGTTTCGGAAACCACCGTAGCTGAAAGTGAACCTCATATCCCATCTCTGTTATCTATGTCTA
CAAGGAACCACATGGATATCACCATTCCACCCTTACCTCCAGTAGCTCCAGAAGTCTTGAGGGTTGCTGA
ACACAGACACCGAAGGGGTCTTATGTATCCATATATTTACCACGTCCTTACTAAGGGTGAGATTAAAATC
CCTGTATGTATTGAGGATGAATGTAACATGGAGCTGCCTCCAGCTGCTCTCCTGTTTCGGTCAGCTCGCC
AATATGTATATGGAGTTCTTTTTAGCCTAGCAGAGACACAGCGAAAAATGGAGCGTCTGGCCATACGGCG
CCGGTTACCTATGGAAGTTCCTTCTGTGATCCTTAAAGAGTGGTCTGCATATAAAGGGAAGTCACCTCAG
ACCCCCGAGCTGGTATCTGCACTCACTTTTCGAGAATGGACTTGCCCAAACCTCAAGAAGCTCTGGTTAG
GCAAAGCAGTTGAGGACAAGAACAGGAGGATGCGGGCTTTCCTGGCCTGTATGAAGTCAGACACGCCCAG
TATGCTCAATCCAGCTAATGTCCCCACCCACCTGCTGCTCATGTGCTGTGTACTCCGATACATGGTTCAG
TGGCCTGGTGGCCGAATCCTGCATCGCCATGAACTTGACACCTTCCTTGCACAGGCAGTTTCTACTCAGC
TTTATGAACCAGATCAGCTTCAAGAACTCAAGATTGAGAAACTGGATGCTCGAGGGATCCAGCTTGCTGC
CCTCTTCATGAGTGGGGTCGACACAGCTCTGTTTGCCAATGATGCATGTGGACAGCCAGTCCCATGGGAG
CACTGCTGCCCCTGGATTTACTTTGATGGCAAGCTGTTCCAGAGCAAACTCATTAAAGCAGGCCGAGAGC
GAGTATCACTGGTTGAACTCTGTGATGGCCAGGCTGACCTGGCCAGCAAAGTGGAGAAGATGCGGCAGAG
CATCCTTGAAGGCGTCAACATGAATCATCCGCCACCTTCTGCTCTGCTCCCCTCACCTACTTTCGTGCCC
CCCATGGTGCCCTCTCTCTACCCTGTTTCTCTGTATTCCAGAGCCATGGGCTCATTTCCACCTCCCCCTC
AAGCAAGGAGTCGAGGGTTTGCAGGTCTCCATCCAATCCCACCCCAAGGAGGAAAACTGGAAATTGCTGG
CATGGTGGTGGGCCAGTGGGCTGGCAGCAGATCTTCCAGAAGTCGAGGATCCTTTGGCATGCAAGTGGTT
TCTGTCGGTGGGCCAGGAAAAGGACACGGAAAAGAACAGGCTGGCAGAGGATCCAAAGGTCACAAAAAAG
GAAATAAACAAGGCTCTTCAGATGTAATTTCCAAAGCCGTGGAGCTTCATCAGAGTCGGGCCCGCTCACA
GGTGAATGGAAACAATGGCACATTGATTGTGGAGGAGAAGAGCGATCCCCTTCCAGCTCCATCCCAGTGC
GCCTTATCCAGAGACAGTAATGAGTGTAATAATAGCGATGACCACTGCCTCCCTGTGAAGAATGGAGAGA
AGAACCATGTACCAGAGCAAGAGCTGGAAGCTGTGGCCCAACAGAAAGAGGAATGA

Translation (1091 aa):
MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPPLPPA
AFGAYSGGAGPSRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWN
AMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFL
PPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNG
KNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPC
DVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNN
RLGNPPLPRNQMGPISPGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFSEDAMLQDNSFANW
AVSYDSNTSQFPNCLTSKTSPPLGPDSSHSSSSDGDEANGAGSEQITEAVQQQPGWEDPNGDRGAWGQPA
DAGVSETTVAESEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKI
PVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPMEVPSVILKEWSAYKGKSPQ
TPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQ
WPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWE
HCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVP
PMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVV
SVGGPGKGHGKEQAGRGSKGHKKGNKQGSSDVISKAVELHQSRARSQVNGNNGTLIVEEKSDPLPAPSQC
ALSRDSNECNNSDDHCLPVKNGEKNHVPEQELEAVAQQKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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