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Report for CCDS22905.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22905.2 Reviewed, update pending Mus musculus 9 AB124611 23 108 98 CCDS HistoryNCBI Gene:382062Re-query CCDS DB by CCDS ID:22905.2Re-query CCDS DB by GeneID:382062See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22905.1
The coding region has been reverted back to start at an alternate, downstream, in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 22905.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173769.2 ENSMUSP00000134056.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173769.2Link to Ensembl Protein Viewer:ENSMUSP00000134056.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173769Re-query CCDS DB by Protein ID:ENSMUSP00000134056
Original member NCBI NM_206536.2 NP_996259.2 Updated not alive Link to Nucleotide Sequence:NM_206536.2Link to Protein Sequence:NP_996259.2Re-query CCDS DB by Nucleotide ID:NM_206536Re-query CCDS DB by Protein ID:NP_996259
Current member NCBI NM_206536.3 NP_996259.3 Pending alive Link to Nucleotide Sequence:NM_206536.3Link to Protein Sequence:NP_996259.3Re-query CCDS DB by Nucleotide ID:NM_206536Re-query CCDS DB by Protein ID:NP_996259Link to BLAST:NP_996259.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996259.3 192 Q75VT8-2 192 100% 0 0

Chromosomal Locations for CCDS 22905.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21526265 21526307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21528763 21529083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21539087 21539114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21539842 21539885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21540586 21540623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21544677 21544793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGGAGGAGAGATGCCCTGGACCATCCTGCTGTTTGCATCTGGCTCCTTGGCCATCCCTGCACCATCCA
TCTCCTTGGTGCCCCCCTACCCAAGCAGCCACGAGGACCCCATCTACATCTCGTGCACAGCCCCAGGGGA
CATCCTAGGGGCCAATTTTACCCTGTTCCGAGGGGGAGAGGTGGTCCAGCTACTACAGGCCCCCTCAGAT
CGGCCTGATGTAACATTCAATGTGACTGGTGGTGGCAGTGGTGGTGGCGGTGAGGCTGCTGGGGGGAACT
TCTGCTGTCAATATGGTGTGATGGGTGAGCACAGTCAGCCCCAGCTGTCGGACTTCAGCCAGCAGGTGCA
GGTCTCCTTCCCAGCTAAAGCCAAAAACTTACAGAAGCAGAGAGAGCGTGAATCCTGCTGGGCTCAGATC
AACTTCACCAATACAGACATGTCCTTTGATAACTCTCTGTTTGCTATCTCCACGAAAATGACTCAGGAAG
ACTCAGTGGCAACCCTAGACTCAGGGCCTCGGAAGAGGCCCACCTCTGCATCATCCTCTCCGGAGCCCCC
TGAGTTCAGCACTTTCCGGGCCTGCCAGTGA

Translation (196 aa):
MGGEMPWTILLFASGSLAIPAPSISLVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSD
RPDVTFNVTGGGSGGGGEAAGGNFCCQYGVMGEHSQPQLSDFSQQVQVSFPAKAKNLQKQRERESCWAQI
NFTNTDMSFDNSLFAISTKMTQEDSVATLDSGPRKRPTSASSSPEPPEFSTFRACQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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