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Report for CCDS87895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87895.1 Public Mus musculus 1 BC034090 23 108 98 CCDS HistoryNCBI Gene:207792Re-query CCDS DB by CCDS ID:87895.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186156.6 ENSMUSP00000139623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186156.6Link to Ensembl Protein Viewer:ENSMUSP00000139623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186156Re-query CCDS DB by Protein ID:ENSMUSP00000139623
Original member Current member NCBI NM_001370865.1 NP_001357794.1 Accepted alive Link to Nucleotide Sequence:NM_001370865.1Link to Protein Sequence:NP_001357794.1Re-query CCDS DB by Nucleotide ID:NM_001370865Re-query CCDS DB by Protein ID:NP_001357794Link to BLAST:NP_001357794.1

Chromosomal Locations for CCDS 87895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155213520 155213713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155217382 155217566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155218260 155218387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155221335 155221587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155223275 155223431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155224911 155226448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155232446 155232589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155240736 155240799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155241425 155242326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155244186 155244229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3609 nt):
ATGGAGGGGATGGAGGCGGCGGCCAAGCCCGCGCGCCGCTCTCAAGCATCCAGGCCAGGGAGCACAACAA
GC
CCCACGCAAGTGACTCCAGCCATGGCCAGAGATGGCGCTGAGCAGCCAGACAGTGGACCTCTCCCGAG
A
CCTTCACCCTGCCCCCAGGAAGACCGAGCATCTAACCTGATGCCCCCCAAGCCTCCCAGGACATGGGGG
CTG
CAGCTCCAAGGTCCTTCTGTGCTGGAGTCCAAGGTAAAGGCCTTGAAGGAGAAAATGACAGCAGGAA
AA
CAAGGGACAGATCCCCGTCCCACTTCCTATGAGCGTCCATCCCCTACAAAATCCAAATGCCACCAAGT
C
AAGACTGGAGTAGCCTGGAGCCTACCAGATGCCCTGGTGGTCCCCCATGCTCAGAACCCTAATGATGGA
CAT
CTGGCCAGACATGTTAATGAGAAGAAACCTGCCAGGAACAGTGGATCCAAGCCATCTACCCCTGAGA
GC
TGGAATGAACAAAGCCCGTGGTCTCCAGAAGCAGTGTGGATGCCGGCTGATCATGAGGAGGACCCAGT
A
GCAGGGTCTGGCTCTTTACAAGAAAGTCCCAACAATCGAGTTTCTGCAGTCCAGCCACAGCGGCCTGGT
CCC
TGTAAAACCACCCCCTTGAGCAGCCAGAAGAAGAGAAGACAATACCCGCTCGGAGATGGGATAGTCA
CA
AAGGAAGATCTGGACAGCACAACCCTAACCTCTAAGGAGGATTTGATCCCTAGAACAGACCAGCCAGA
G
ACATTCTGGAGAGCTCAGGGCCTGGAGGCTCTGGGCTCTGTGGCAAATGCTTTGTCCCTGTCTGACAGG
GTA
GAGAGGAACCGCCTCCTGTTGCAGGAGATACTGAAGGTTTCCAGACAGAGTCCTCCCAAAGCAGGGA
GC
CCAGACTGGACATCCTGGGACCGAGATGCATCAGAGCGACCAGCGGGAGACGTGGACTGGGACTCGGG
C
ACCCCCCAGCAGGACTCAGGTCAGAGCAGGACCTTTGTTCCCAAGCTGGAGCCTACACTGAGTGCCAGG
CAT
GAGGAAGCCAAGAATCTGCTTCGGCGTGCTCGCATGAAGGCCAAGACCCAACCGCTCCGAGCCAGCC
AT
GATATCGTGCCCACCATTGCTCAGGGCTGCCGAAATGGCCAGAGAAGCCCAGCCCCGGAATTGAGGAC
C
ACCTCTGCCTACAGAGAGAACCTCCAGAATGGGAACTTGAATGACCCCTCCAGCATAGAGTCCAGCAAT
GGG
CAGTGGCCCAAGCAAGAAATGCCCCTGTCTCATGTCCGTTTTGAAGATGAGTCTGCCCACGAGGCTG
AA
TTCCGGTACCTGGACCGGCTTCAGCAGCGCCAGCGTCAAGTGTTAAGCACAGTGCTCCATGCTGTGGA
C
CAAGGACCTCTACGCTCCAAACCCGACCTAACCAACTACATTAACCGCATTGTAGGGAATAGCTCATTT
CAT
AGGGCCGTGGGCTGCCTGGACCAGAGTAACTTCCCTGTACCACCACCTCCTTGGGACAATGAGAGGA
AG
TGTCCAGCCTGTGGCAGCTGTCTGGAGGAGCGTTGCCCTGCTGAGGAGAGGGCAGCCTCTGACCTGAG
A
GTCCTCCGGAGTCTCCAGGCTGCCTGTGAGGCAGAGGCAGTACTGCTGGGGCCCTGTAATTCCCATGGT
CTG
AGCTCCCCATTCCCAGGGCTCCACACAGAATGGATCCGGGAAACACACATCACAGACACTGTTGCCA
CA
CACCCTGAGGAAGAGGAGGACTCTGCCCTGGACAGCACCCACAGTTCAGACAGCTGGAAAGATGGTAC
T
GATGCCAGGACCTCTCAGTCTAGCAGGGCAGGTGAGCAGATCCGAGTGAGCAGCCCCCAGCAGCGGTGG
CAT
GGGTCTAGGCCCCAGGGAGGTCCCAGGTGGTCCAGAAAGGCTGAGGCGGAGCTGCCCTGCGGCCTTC
AG
GCCTGGTCTCACCTGCCCCAGCTTGATGATGGGGTTGTAGGAGGGGAGGGGAGAGAAGCCAGTGGACA
C
ATACCTCAGGGGACTCTGTTTCCAGAGGAAGATGCTGTGCCTAAACCTGCCTTGGAACCTAAGAGACCT
TGG
TCCCAGGGGCAGCTTGGACCTCGGTCAGGAAGTCACTGTGCCCACCCCGAGGACTGCAGATCTCCAT
GC
AGGACAGCTTATGCTGTGCCGTTTTCCAAGACACGTGGGTCCTCAGGATCAGGCCAACCACCAGACCA
A
GTTCCTGAAAGCCATGAGTCTCTGAAAACTCTCTGCACTTCTCCCCTCCAACGGAGCCATGAAGAGCCC
TCT
GCACCCCTCCCAGCCTCACAGTCAACATTGACCCTCCCCGAGGAAGTGCCAACCCCTCCTTCTTTGA
GG
AAATCCCTCTGCCCTATGCCTCCGAGGAAGTCAGTCCAGAAGGGGCATCACTGGCAGGAACACCAGGC
A
GAGCATATGGATAGCCCCCTGCCTGTGTCCCCTCCAAGAACTGTGGTTCTCACGCGACCCCAACCCCAA
CCC
TGTAGCCCCCAAGTCAAGCATCCACTGCTGGACCTGTTCAACAACAACTCCAGCAGCAGCATCCCTC
TA
GGGCTGCAGGGGCCCTCAGGAGTGGCTGTCCACAGGAATAGATCTGAAAAGGACCAGTGCTGTCAGGA
G
CCTGTGCTGCCTCTGGAGAGCAATGGAGATGGAACACTCCAGGACTCTCTCCAGTCAGTGGATATCGCC
ACT
GTCAACTCTACAGCCATCACCCTCGCCCTTACCTCAGAGGAGCCTGAGCGCAGCCAGGAGTGGGGAG
GA
GGTTCACAGAGGACAGGATCCAGCTCTGGGGGCCATGTGCCCACTGGAGCATCACTTGAGGCCAGTGC
A
GGGCACAGGTCACCCTCAAGCACCCATTCTGATGGGAACAAGAAAAGGAGGAGTAGCATTACCTCTGCC
CTG
GGGCTCAAAAAGCTTTTCTCAGCCCTGGGCCACACACCCCAGCCCAGACTTGGCCCATCCCGAAGCT
AC
AGTGTGGAACAACTGCAGCCCTCAGCCCTGGCTCCACAGACCAGCACCCCCAAAGTGAAAAGAGCCCC
A
TCGTTACAGACCCTGCATCTGGTGTCATCCTCCCATCAGCATCGGAGAGCAACTTCCTTCCAGAACCTC
CAT
TCTCTGCTAGGTGGCAAGGGAGACCGGTCCAGCCTCTACCTGGTAGAGGGGTCAGGGGACAGCAGTG
GA
CCCAGCAGGCCAGCCAAGGCCTTTCCCCATCGTGCCCTCAGTGTGGAAGATGTGGGTGCCCCTAGCCT
G
GCTCGTACTGTGGGCCGCGTGGTGGAGGTGTTCCCAGATGGCACGAGCCAGCTGCAGCTGCAGCGACCC
CCA
AAGGGCACCTTTGGATTCCATGTAGCCCATGGCAGTGGCCGGCGAGACTCAGGGCTCTATGTGCAGG
CC
ATGGCTGACCTGGACACCGCGAAGCTGTACTCGGGGCTGCTCAGGGTCGGGGATGAGATTCTGGAGGT
G
GGCGGGGCCAAGGTTGCTGGACTGGGCTTGGCTCACATCAAAGAGCTACTGGCTCATGCGGAGAGCTTG
TCC
ATTCGTGTCCTGAGACAAAGGCCGGTCCCCCAGTGA


Translation (1202 aa):
MEGMEAAAKPARRSQASRPGSTTSPTQVTPAMARDGAEQPDSGPLPRPSPCPQEDRASNLMPPKPPRTWG
L
QLQGPSVLESKVKALKEKMTAGKQGTDPRPTSYERPSPTKSKCHQVKTGVAWSLPDALVVPHAQNPNDG
H
LARHVNEKKPARNSGSKPSTPESWNEQSPWSPEAVWMPADHEEDPVAGSGSLQESPNNRVSAVQPQRPG
P
CKTTPLSSQKKRRQYPLGDGIVTKEDLDSTTLTSKEDLIPRTDQPETFWRAQGLEALGSVANALSLSDR
V
ERNRLLLQEILKVSRQSPPKAGSPDWTSWDRDAS
ERPAGDVDWDSGTPQQDSGQSRTFVPKLEPTLSAR
H
EEAKNLLRRARMKAKTQPLRASHDIVPTIAQGC
RNGQRSPAPELRTTSAYRENLQNGNLNDPSSIESSN
G
QWPKQEMPLSHVRFEDESAHEAEFRYLDRLQQRQRQVLSTVLHAVDQGPLRSKPDLTNYINRIVGNSSF
H
RAVGCLDQSNFPVPPPPWDNERKCPACGSCLEERCPAEERAASDLRVLRSLQAACEAEAVLLGPCNSHG
L
SSPFPGLHTEWIRETHITDTVATHPEEEEDSALDSTHSSDSWKDGTDARTSQSSRAGEQIRVSSPQQRW
H
GSRPQGGPRWSRKAEAELPCGLQAWSHLPQLDDGVVGGEGREASGHIPQGTLFPEEDAVPKPALEPKRP
W
SQGQLGPRSGSHCAHPEDCRSPCRTAYAVPFSKTRGSSGSGQPPDQVPESHESLKTLCTSPLQRSHEEP
S
APLPASQSTLTLPEEVPTPPSLRKSLCPMPPRKSVQKGHHWQEHQAEHMDSPLPVSPPRTVVLTRPQPQ
P
CSPQVKHPLLDLFNNNSSSSIPLGLQGPSGVAVHRNRSEKDQCCQEPVLPLESNGD
GTLQDSLQSVDIA
T
VNSTAITLALTSEEPERSQEWGGGSQRTGSSSGGHVPT
GASLEASAGHRSPSSTHSDGNKKRRSSITSA
L
GLKKLFSALGHTPQPRLGPSRSYSVEQLQPSALAPQTSTPKVKRAPSLQTLHL
VSSSHQHRRATSFQNL
H
SLLGGKGDRSSLYLVEGSGDSSGPS
RPAKAFPHRALSVEDVGAPSLARTVGRVVEVFPDGTSQLQLQRP
P
KGTFGFHVAHGSGRRDS
GLYVQAMADLDTAKLYSGLLRVGDEILEVGGAKVAGLGLAHIKELLAHAESL
S
IRVLRQRPVPQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser