NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36464.1 Public Mus musculus 12 Vcpkmt 23 108 98 CCDS HistoryNCBI Gene:207965Re-query CCDS DB by CCDS ID:36464.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058639.10 ENSMUSP00000055002.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058639.10Link to Ensembl Protein Viewer:ENSMUSP00000055002.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000058639Re-query CCDS DB by Protein ID:ENSMUSP00000055002
Original member NCBI NM_001033236.2 NP_001028408.2 Updated not alive Link to Nucleotide Sequence:NM_001033236.2Link to Protein Sequence:NP_001028408.2Re-query CCDS DB by Nucleotide ID:NM_001033236Re-query CCDS DB by Protein ID:NP_001028408
Current member NCBI NM_001033236.3 NP_001028408.2 Accepted alive Link to Nucleotide Sequence:NM_001033236.3Link to Protein Sequence:NP_001028408.2Re-query CCDS DB by Nucleotide ID:NM_001033236Re-query CCDS DB by Protein ID:NP_001028408Link to BLAST:NP_001028408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028408.2 228 Q8C436-1 228 100% 0 0

Chromosomal Locations for CCDS 36464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69577926 69577940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69579906 69580010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69581118 69581237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69582276 69582345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69582520 69582630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69582721 69582986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGCGGCCGCCGTGGAGCCGGAGGTGGAGGACCCGCTGTGGAGCTTTGTGCGGGTTCTGGAGAAGCGGG
ATGGGACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGGCGTGGGTTGCGTTGTGTGGGACGCCGCCAT
CGTCCTTTCCAAATACCTGGAGACGCCGGGGTTTTCTGGCGACGGGGCCCACGCGCTGAGTCGGCGCTCG
GTGCTGGAGCTGGGCTCCGGCACGGGGGCCGTGGGGCTCATGGCTGCGACCCTCGGGGCAGATGTTATAG
TCACTGATCTTGAAGAGCTGCAGGACTTGCTGAAAATGAATATTGATATGAACAAGCATCTTGTGACTGG
TTCTGTTCAAGCCAAGGTACTGAAATGGGGTGAAGACATAGAAGACTTGATGTCACCAGACTACATATTG
ATGGCAGACTGTATATACTATGAGGAGTCCTTGGAACCACTGCTGAAAACATTAAAAGATCTCAGTGGAT
CTGAAACTTGTATTATATGTTGTTACGAACAACGTACAATGGGGAAAAATCCAGAAATTGAGAAGAAGTA
TTTTGAGCTCCTGCAGCTAGACTTTGACTTTGAAGAAATCCCTTTGGACAAACATGATGAAGAATACCGA
AGTGAAGACATTCATATTGTGTACATCAGAAAGAAAAAGCCAAAACCGCCATCATGA

Translation (228 aa):
MAAAVEPEVEDPLWSFVRVLEKRDGTVLRLQQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHALSRRS
VLELGSGTGAVGLMAATLGADVIVTDLEELQDLLKMNIDMNKHLVTGSVQAKVLKWGEDIEDLMSPDYIL
MADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEEIPLDKHDEEYR
SEDIHIVYIRKKKPKPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH