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Report for CCDS37286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37286.1 Public Mus musculus 16 Map6d1 23 108 98 CCDS HistoryNCBI Gene:208158Re-query CCDS DB by CCDS ID:37286.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040880.8 ENSMUSP00000043332.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040880.8Link to Ensembl Protein Viewer:ENSMUSP00000043332.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040880Re-query CCDS DB by Protein ID:ENSMUSP00000043332
Original member Current member NCBI NM_198599.2 NP_941001.2 Accepted alive Link to Nucleotide Sequence:NM_198599.2Link to Protein Sequence:NP_941001.2Re-query CCDS DB by Nucleotide ID:NM_198599Re-query CCDS DB by Protein ID:NP_941001Link to BLAST:NP_941001.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941001.2 191 Q14BB9 191 100% 0 0

Chromosomal Locations for CCDS 37286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20235962 20236039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20236587 20236704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20240934 20241313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGCGTGGCCCTGCATCAGCCGGCTGTGCTGCCTGGCCCGGCGATGGAACCAGCTGGACCGCTCGGACG
TAGCGGTGCCGCTGACTCTGCATGGTTACTCGGACCCCGGGAGCGAGGAGTCGGGCGCAGACTGCAGCGT
CTCGCGCGGGAACCCGTCGGTCGCAGGCGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAG
CGCGATTTCGGTGTGCGAACCGCGCGCGCCGGGTCCCGGGATGCGGCTCAAGAGCGCCCATCGGGGCCGG
GCGGCCGCAGAGGCCAGTCCTCGGCGCCCCCCACCCGGACGGTCTACGTGCTGCCGGTCGGGGACGCGGA
CGCAGCTGTAGTAGCGACCACGTCTTATAGACAGGAATTCCAAGCTTGGACTGGAGTGAAGCCCTCAAGA
TCCACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGCTCCGGATGGGACCCCAGCCCTGGGGCCA
GCTTCCAGGTTCCAGAGGTGAGGAAATTCACACCTAATCCCTCAGCCATCTTTCAGACATCAGCTCCTCA
GACTCTCAATGTGTGA

Translation (191 aa):
MAWPCISRLCCLARRWNQLDRSDVAVPLTLHGYSDPGSEESGADCSVSRGNPSVAGARESSRAVPLTQYQ
RDFGVRTARAGSRDAAQERPSGPGGRRGQSSAPPTRTVYVLPVGDADAAVVATTSYRQEFQAWTGVKPSR
STKARTARVVTTHSSGWDPSPGASFQVPEVRKFTPNPSAIFQTSAPQTLNV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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