NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15345.1 Public Mus musculus 1 Ro60 23 108 98 CCDS HistoryNCBI Gene:20822Re-query CCDS DB by CCDS ID:15345.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159879.1 ENSMUSP00000125623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159879.1Link to Ensembl Protein Viewer:ENSMUSP00000125623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159879Re-query CCDS DB by Protein ID:ENSMUSP00000125623
Original member Current member NCBI NM_013835.2 NP_038863.1 Accepted alive Link to Nucleotide Sequence:NM_013835.2Link to Protein Sequence:NP_038863.1Re-query CCDS DB by Nucleotide ID:NM_013835Re-query CCDS DB by Protein ID:NP_038863Link to BLAST:NP_038863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038863.1 538 O08848 538 100% 0 0

Chromosomal Locations for CCDS 15345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 143757742 143757894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143759943 143760089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143760353 143760466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143761270 143761386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143765433 143765570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143765774 143765920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143766590 143766810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143770426 143771005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGAAGGATCTGCAAACCAGTTGCAGCCACTGAGTGAGACTCAAGTAGTTAACTCAGAGGGCGGCTGTG
TATGGCAGGTCACCGACATGAACCGGCTGCGCCGCTTCTTGTGTTTTGGCTCTGAAGGTGGCACGTACTA
TATCAAAGAACAGAAGCTGGGCCTTGAGAATGCTGAAGCCTTAATTAGACTGATTGAAGACGGCAGAGGA
TGTGAAGTGATCCAGGAAATCAAGTCCTTTAGTCAGGAAGGCAGGACTGCCAAACAAGAGCCACTGCTGT
TTGCACTGGCCGTTTGTTCCCAGTGTGCGGACATAAACACAAAGCAAGCAGCCTTTAAAGCTGTCCCTGA
AGTGTGTCGCATTCCGACCCACCTCTTCACTTTTATCCAGTTTAAGAAAGACCTGAAGGAGAGCATGAAG
TGTGGCATGTGGGGTCGCGCCCTCCGGAAGGCAGTGGCAGACTGGTACAATGAAAAAGGCGGCATGGCCG
TGGCGCTGGTGGTTACAAAGTATAAACAACGAAACGGCTGGTCTCACAAAGATCTCCTCCGACTGTCCCA
CCTTAAGCCTTCCAGTGAAGGACTTGCTATTGTGACCAAGTATATCACAAAGGGCTGGAAAGAAGTCCAT
GAAGAGTATAAAGAAAAGGCGCTTTCTGTGGAGGCTGAGAAGCTGCTCAAGTACCTGGAGGCTGTGGAGA
AAGTGAAGCGCACGAAAGACGACCTGGAAGTCATTCATCTGATTGAAGAGCATCAGTTAGTTAGGGAACA
CCTGCTGACAAATCACTTGAAGTCTAAAGAGGTATGGAAGGCTTTGTTACAGGAAATGCCCCTTACTGCG
CTCCTGAGGAACCTGGGAAAGATGACTGCTAATTCAGTGCTTGAACCAGGAAACTCTGAAGTATCTTTAA
TATGTGAAAAACTGAGCAATGAAAAGCTGCTCAAAAAGGCTCGTATACATCCATTTCATGTTTTAATTGC
ATTAGAGACCTACAGAGCAGGCCACGGGCTCAGAGGGAAACTGAAGTGGATTCCAGATAAAGACATCTTG
CAAGCCTTAGATGCTGCTTTTTATACAACATTTAAGACTGTTGAACCAACTGGGAAGCGCTTCTTGCTCG
CTGTTGACGTCAGTGCCTCTATGAACCAGAGAGCCTTGGGTAGTGTACTCAATGCTAGTACTGTTGCCGC
AGCAATGTGCATGGTGGTTACACGGACAGAAAAAGAGTCTTCGGTGGTTGCTTTTGCCTGTGATATGGTT
CCGTTTCCAGTGACTACAGACATGACATTACAGCAGGTTTTAACGGCTATGAATAAAGTTCCAGCAGGCA
ACACGGATTGCTCTCTCCCAATGATCTGGGCCCAGAAAACAGACACAGCCGCAGATGTCTTCGTTGTGTT
TACTGATAATGAGACCTTTGCAGGGCAGGTGCATCCTGCTGTTGCCCTGAGAGAGTACCGAAAGAAAATG
GATATTCCTGCTAAATTGATTGTTTGTGGGATGACATCAAATGGCTTTACCATTGCAGACCCAGACGATA
GAGGCATGTTGGATATGTGCGGCTTTGATACTGCAGCTCTGGATGTAATTCGGAATTTCACATTGGATGT
CATTTAA

Translation (538 aa):
MEGSANQLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRG
CEVIQEIKSFSQEGRTAKQEPLLFALAVCSQCADINTKQAAFKAVPEVCRIPTHLFTFIQFKKDLKESMK
CGMWGRALRKAVADWYNEKGGMAVALVVTKYKQRNGWSHKDLLRLSHLKPSSEGLAIVTKYITKGWKEVH
EEYKEKALSVEAEKLLKYLEAVEKVKRTKDDLEVIHLIEEHQLVREHLLTNHLKSKEVWKALLQEMPLTA
LLRNLGKMTANSVLEPGNSEVSLICEKLSNEKLLKKARIHPFHVLIALETYRAGHGLRGKLKWIPDKDIL
QALDAAFYTTFKTVEPTGKRFLLAVDVSASMNQRALGSVLNASTVAAAMCMVVTRTEKESSVVAFACDMV
PFPVTTDMTLQQVLTAMNKVPAGNTDCSLPMIWAQKTDTAADVFVVFTDNETFAGQVHPAVALREYRKKM
DIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTAALDVIRNFTLDVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH