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Report for CCDS15067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15067.1 Public Mus musculus 1 Stk16 23 108 98 CCDS HistoryNCBI Gene:20872Re-query CCDS DB by CCDS ID:15067.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027401.10 ENSMUSP00000027401.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027401.10Link to Ensembl Protein Viewer:ENSMUSP00000027401.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027401Re-query CCDS DB by Protein ID:ENSMUSP00000027401
Original member Current member NCBI NM_001277992.1 NP_001264921.1 Accepted alive Link to Nucleotide Sequence:NM_001277992.1Link to Protein Sequence:NP_001264921.1Re-query CCDS DB by Nucleotide ID:NM_001277992Re-query CCDS DB by Protein ID:NP_001264921Link to BLAST:NP_001264921.1
Original member Current member NCBI NM_011494.5 NP_035624.3 Accepted alive Link to Nucleotide Sequence:NM_011494.5Link to Protein Sequence:NP_035624.3Re-query CCDS DB by Nucleotide ID:NM_011494Re-query CCDS DB by Protein ID:NP_035624Link to BLAST:NP_035624.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264921.1 305 O88697 305 100% 0 0
NP_035624.3 305 O88697 305 100% 0 0

Chromosomal Locations for CCDS 15067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75211329 75211414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75211925 75212144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75212600 75212733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75212886 75213006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75213133 75213228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75213576 75213697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75213814 75213952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGCCACGCACTGTGTGTCTGCTCCCGGGGAACTGTCATCATTGACAATAAGCGTTACCTCTTCGTCC
AGAAATTGGGGGAAGGTGGATTCAGCTATGTGGACCTAGTGGAGGGCTTGCATGATGGACACTTCTACGC
CCTGAAGCGGATCCTGTGCCATGAGCAGCAAGACCAGGAAGAAGCCCAACGAGAGGCAGAGATGCATCGC
CTCTTCCAGCATCCCAACATCCTTCGCCTCATGGCTTACTCTCTGAAAGAACGAGGTGCTAAGCATGAAG
CCTGGCTGCTGCTGCCCTTCTTCAAGAAAGGTACACTGTGGAATGAGATAGAAAGGCTGAAGGACCAAGG
CAGCTTCCTGACTGAAGACCAGATCCTGCCGCTGTTGCTGGGTATCAGCAGAGGCCTTGAGGCTATTCAT
GCCAAAGGTTATGCACACAGGGACCTGAAGCCCACCAATATTTTGCTTGGTGATGAGGGGCAGCCAGTTT
TAATGGACTTGGGTTCTATGAATCAAGCATGCATTCAAGTGGAGGGCTCTCGCCAGGCACTAGCTCTTCA
GGACTGGGCAGCTCAGCGGTGCACCATCTCCTACCGGGCACCTGAACTTTTTTCTGTGCAAAGCCACTGT
GTCATCGATGAGCGGACTGATGTCTGGTCCCTAGGCTGTGTGCTTTATGCCATGATGTTTGGGGAAGGCC
CTTACGATATGGTGTTCCAGAAGGGTGACAGTGTGGCCCTTGCTGTGCAGAATGAACTCAGCATCCCACA
AAGCCCCAGGCATTCTTCAGCATTGCGACAGCTATTGTCTTCTATGATGACTGTGGACCCCCAGCAGAGG
CCTCACATCCCTGTCCTCCTCAGTCAGTTGGAGGCATTGCAGCCACCAGCTCCTGGCCAGCACACCACCC
AAATCTGA

Translation (305 aa):
MGHALCVCSRGTVIIDNKRYLFVQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDQEEAQREAEMHR
LFQHPNILRLMAYSLKERGAKHEAWLLLPFFKKGTLWNEIERLKDQGSFLTEDQILPLLLGISRGLEAIH
AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIQVEGSRQALALQDWAAQRCTISYRAPELFSVQSHC
VIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNELSIPQSPRHSSALRQLLSSMMTVDPQQR
PHIPVLLSQLEALQPPAPGQHTTQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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