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Report for CCDS40490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40490.1 Public Mus musculus 8 Gan 23 108 98 CCDS HistoryNCBI Gene:209239Re-query CCDS DB by CCDS ID:40490.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064488.10 ENSMUSP00000070168.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064488.10Link to Ensembl Protein Viewer:ENSMUSP00000070168.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064488Re-query CCDS DB by Protein ID:ENSMUSP00000070168
Original member Current member NCBI NM_001081151.2 NP_001074620.1 Accepted alive Link to Nucleotide Sequence:NM_001081151.2Link to Protein Sequence:NP_001074620.1Re-query CCDS DB by Nucleotide ID:NM_001081151Re-query CCDS DB by Protein ID:NP_001074620Link to BLAST:NP_001074620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074620.1 597 Q8CA72 597 100% 0 0

Chromosomal Locations for CCDS 40490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 117158135 117158301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117183501 117183615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117187147 117187497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117190272 117190489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117190664 117190785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117193240 117193352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117194113 117194262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117195766 117195902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117196452 117196580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117203950 117204059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117204147 117204328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCCGAGGGCAGCGCTGTGTCCGACCCTCAGCACGCCGCGCGCCTGCTGCGGGCGCTCAGCTCGTTCC
GGGAGGAGGCGCGTTTCTGCGACGCGCATCTGGTCCTCGACGGCGAGGAGATCCCGGTGCAGAAGAACAT
CCTGGCGGCGGCCAGCCCGTACATCAGGACAAAGTTAAACTATAATCCTCCAAAAGATGACGGATCCACT
TATAAGATTGAACTTGAAGGGATATCGGTAATGGTGATGAGAGAGATCCTGGATTACATCTTCAGTGGGC
AGATCAGGTTAAATGAAGATACAATCCAGGATGTTGTGCAGGCAGCCGACCTGCTGCTGCTGACGGACCT
GAAAACGCTGTGCTGTGAGTTCCTGGAGGGCTGCATAGCGGCGGAGAACTGCATTGGCATCCGGGACTTT
GCGCTGCACTACTGCCTGCACCACGTGCATTACCTGGCCACTGAGTACCTGGAGACCCACTTCCGAGACG
TCAGCAGCACAGAGGAGTTCCTGGAGCTGAGTCCACAGAAACTCAAAGAAGTGATCTCTCTCGAGAAGCT
GAACGTTGGCAACGAGAGATACGTGTTCGAGGCAGTGATTCGGTGGATAGCACACGATGTAGAGATGAGA
AAGGTCCACATGAAGGATGTCATGTCAGCGCTGTGGGTCTCGGGGCTGGACTCCAGCTACCTGCGCGAGC
AGATGCTGAATGAACCCTTGGTGCGAGAAATCGTCAAAGAGTGCAGCAACATCCCGCTCAGCCAGCCGCA
GCAGGGGGAGGCCATGCTGGCCAGCTTCAAGCCCAGGGGCTACTCAGAGTGCATAGTGACCATCGGAGGG
GAGGAGAGAGTGTCACGGAAACCCACAGCGGCCATGCGATGTATGTGCCCTCTCTACGACCCTAACCGGC
AGCTGTGGATTGAACTGGCTCCTCTGAGCATGCCGAGAATTAACCATGGAGTTCTTTCAGCAGAAGGATT
TCTGTTTGTGTTGGGGGGCCAAGATGAAAACAAGCAGACGCTGAGCTCAGGAGAGAAGTATGACCCAGAC
GCTAACACGTGGACTGCGCTCCCACCCATGCATGAGGCAAGACACAACTTTGGGATCGTGGAGATAGACG
GGATGCTCTACATCCTTGGAGGGGAGGATGGCGATCGAGAGCTCATTTCCATGGAGTGTTATGATATTTA
TTCCAAAACCTGGACGAAGCAGCCCGACTTGACCATGGTTAGGAAGATTGGCTGCTATGCAGCTATGAAA
AAGAAAATCTATGCCATGGGCGGAGGCTCGTATGGAAAACTGTTTGAGTCTGTGGAGTGTTACGACCCAC
GGACCCAGCAATGGACTGCCATATGCCCACTGAAAGAGAGGAGGTTTGGAGCAGTGGCCTGTGGTGTTGC
CATGGAGCTGTATGTGTTTGGAGGCGTCCGAAGTCGAGAGGACATCCAGGGCAGCGAGATGGTCACCTGC
AAGTCCGAGTTCTATCATGACGAGTTTAAGAGGTGGATCTACCTTAACGATCAGAACCTATGCATCCCTG
CCAGCTCCTCCTTTGTCTACGGAGCGGTCCCCATAGGAGCCAGTATTTATGTTATCGGAGACCTGGACAC
AGGTACCAACTACGACTACGTGCGGGAGTTTAAGAGAAGCACGGGCACCTGGCACCACACAAAGCCACTC
CTGCCATCTGACCTTCGGCGCACAGGCTGTGCAGCCCTGCGCATAGCCAACTGCAAGCTCTTCCGCCTGC
AGCTGCAACAAGGCTTGTTCCGCATCCGGGTCCATTCCCCTTGA

Translation (597 aa):
MAEGSAVSDPQHAARLLRALSSFREEARFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST
YKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDF
ALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDVEMR
KVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTIGG
EERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVLGGQDENKQTLSSGEKYDPD
ANTWTALPPMHEARHNFGIVEIDGMLYILGGEDGDRELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMK
KKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGSEMVTC
KSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPL
LPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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