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Report for CCDS15816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15816.1 Public Mus musculus 2 Surf2 23 108 98 CCDS HistoryNCBI Gene:20931Re-query CCDS DB by CCDS ID:15816.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015017.7 ENSMUSP00000015017.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015017.7Link to Ensembl Protein Viewer:ENSMUSP00000015017.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015017Re-query CCDS DB by Protein ID:ENSMUSP00000015017
Original member NCBI NM_013678.3 NP_038706.1 Updated not alive Link to Nucleotide Sequence:NM_013678.3Link to Protein Sequence:NP_038706.1Re-query CCDS DB by Nucleotide ID:NM_013678Re-query CCDS DB by Protein ID:NP_038706
Current member NCBI NM_013678.4 NP_038706.1 Accepted alive Link to Nucleotide Sequence:NM_013678.4Link to Protein Sequence:NP_038706.1Re-query CCDS DB by Nucleotide ID:NM_013678Re-query CCDS DB by Protein ID:NP_038706Link to BLAST:NP_038706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038706.1 257 P09926 257 100% 0 0

Chromosomal Locations for CCDS 15816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26916426 26916503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26916705 26916859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26917428 26917531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26918873 26919055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26919192 26919358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26919727 26919813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGACGAACCACCCTCTGATGTGCTTGCATTCTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACA
CCCGCAAGGTTCGCTGCTCCCTAACTGGCCATGAGCTGCCCTGCCGTCTGCCCGAGCTCCAGGAATACAC
CCGCGGCAAGAAGTACCAACGGCTGTCAAGTTCCTTCTCTAACTTCGATTACGCAGCTTTCGAGCCACAC
ATTGTGCCCAGCACAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCC
CAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAATATGAAGAGTGTCA
GAAACAAGGTGTGGAATATGTCCCTGCCTGCCTTCTACACAAGAGGAAGAAGAGAGAGGACCAGACGAAC
AGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGA
GTGACGACAGCATGACAGACCTATACCCACCTGAGCTGTTCACAAAGAGAGAACTAGGCAAGCCTAAGAA
CGATGACACTCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGC
TTTAGAGAGAGGGAAGAGGCCAGAGTGGGCCACAAGAGGGGTCGTAAACTGAGGAAGAAGCAGCTCACCT
CCTTGACCAAGAAGTTCAAGAGCTATCATCACAAGCCCAAGAACTTCAGTTCCTTTAAGCAGCTGGGGAG
ATGA

Translation (257 aa):
MDEPPSDVLAFLRQHPSLRLLPNTRKVRCSLTGHELPCRLPELQEYTRGKKYQRLSSSFSNFDYAAFEPH
IVPSTKNRHQLFCKLTLRHINKSPEHVLRHTQGRRYQRALHQYEECQKQGVEYVPACLLHKRKKREDQTN
SDELPGQRTGFWEPASSDEEDALSDDSMTDLYPPELFTKRELGKPKNDDTPEDFLTDQQDEKPEHSEEKS
FREREEARVGHKRGRKLRKKQLTSLTKKFKSYHHKPKNFSSFKQLGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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