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Report for CCDS21772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21772.1 Public Mus musculus 7 Tmc7 23 108 98 CCDS HistoryNCBI Gene:209760Re-query CCDS DB by CCDS ID:21772.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044195.5 ENSMUSP00000046927.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044195.5Link to Ensembl Protein Viewer:ENSMUSP00000046927.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044195Re-query CCDS DB by Protein ID:ENSMUSP00000046927
Original member NCBI NM_172476.4 NP_766064.2 Updated not alive Link to Nucleotide Sequence:NM_172476.4Link to Protein Sequence:NP_766064.2Re-query CCDS DB by Nucleotide ID:NM_172476Re-query CCDS DB by Protein ID:NP_766064
Current member NCBI NM_172476.5 NP_766064.2 Accepted alive Link to Nucleotide Sequence:NM_172476.5Link to Protein Sequence:NP_766064.2Re-query CCDS DB by Nucleotide ID:NM_172476Re-query CCDS DB by Protein ID:NP_766064Link to BLAST:NP_766064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766064.2 726 Q8C428-1 726 100% 0 0

Chromosomal Locations for CCDS 21772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118538137 118538217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118539415 118539493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118541886 118542041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118543299 118543429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118545602 118545788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118547317 118547414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118547604 118547721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118549935 118550092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118551136 118551309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118552698 118552845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118555823 118555968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118558856 118558938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118560991 118561158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118564217 118564365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118566185 118566425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118584604 118584667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGAGCGAGGGCAGCGCGGGCGACCCGGGCCACGGGTCCAGCCGGCAGCGGGCCGTACACCCAGAGAACC
TGTCTCTGGGTTCTAGCTGTTTCTCTCCACCTGTGAACTTCCTTCAAGAGCTGCCAAGCTATCGGTCAGT
GGCACGTAGGAGAACAAACATCCTCTCTCGGGACAAGCAAAGTGGCACCCTGCTGAAGCCGACAGACTCT
TTCAGTTGCCAGCTGGATGGAGGAATCACAGAAAACCTCAACAGCCAATCCATCCGCAAGTATGCACTGA
ACATCTCTGAGAAGCGGAGACTAAGGGACATTCAGGAAACCCAAATGAAGTATTTATCAGAGTGGGACCA
GTGGAAACGGTACAGCAGCAAGTCCTGGAAGAGGTTCCTAGAGAAAGCTCGAGAGATGACAACCCACCTG
GAACTGTGGCGCAAAGACATCCGCAGCATTGAAGGAAAGTTTGGCACGGGGATCCAGTCCTACTTCTCAT
TCCTGCGGTTCCTGGTGGTGCTGAACCTGGTGATATTCCTGATCATCTTCATGTTGGTTTTGCTTCCAAT
CCTACTCACCAAGTACAAGATTACCAACAGCACTTTTGTGCTCATCCCGTTCAAAGACATGGATATTCAG
TGCACACTGTATCCAATAAGTAGCTCTGGGCTCATTTACTTCTACAGTTACATCATAGACCTGCTGTCTG
GAACAGGATTCTTGGAGGAGACCAGCCTTTTTTATGGGCACTACACCATTGATGGTGTAAAGTTCCAGAG
CTTCACGTATGACCTGCCCCTGGCTTACTTGATAAGCACGATTGCCTACCTGGCCCTGAGCCTCCTTTGG
ATCGTGAAAAGGTCGGTGGAAGGGTTCAAGATCAACCTGATTCGGAGCGAGGAACACTTTCAGAGTTACT
GTAATAAGATCTTCGCTGGCTGGGACTTCTGCATCACCAACCGCAGCATGGCTGAGCTGAAGCACAGCAG
CTTGCGGTACGAGCTCCGAGCAGATCTGGAAGAAGAGAGAATACGACAGAAAATAGCAGAAAGGACCTCA
GAGGAGACCATCCGCATTTACACTTTGAGGCTGTTTTTGAACTGCATTGTGCTTGCTGTGCTAGCGGCAT
GCTTTTATGCAATCTACCTAGCAACTGCCTTCTCACAGGAACACATGAAAAAAGAAATTGACAAGATGGT
TTTTGGGGAGAACCTGTTGATATTGTACCTCCCGTCCATTGTGATTACCCTGGCCAATTTCATTACCCCA
ATCATCTTTGCCAAGATCATCCACTACGAGGATTACTCGCCAGGCTTTGAGATCCGCCTGACGATTCTTA
GGTGTGTCTTTATGCGGCTGGCCACCATCTGTGTGCTGGTGTTCACGCTGGGCTCCAAGATCACATCCTG
TGGTGACAGCACGTGTGAACTCTGCGGCTATAACCAGAAACTCTACCCGTGCTGGGAGACTCAGGTGGGA
CAGGAAATGTACAAGCTGATGATCTTCGACTTCATCATCATCCTGGCCGTGACGCTGTTTGTGGATTTCC
CTAGGAAGCTCCTGGTGACCTACTGTGCCTCCTCAAAGCTGATCCAGTGCTGGGGCCAGCAGGAATTCGC
CATCCCCGACAATGTCCTGGGCATCGTGTACGGGCAGACCATCTGTTGGATTGGAGCCTTCTTCTCCCCA
CTCCTCCCTGCCATTGCCACCTTGAAATTCGTTATCATCTTTTATGTGAAAGAGTTGAGTCTTCTCTACA
CCTGCAGACCCTCCCCGAGGCAGTTCAGAGCATCCAATTCTAACTTCTTCTTCCTGCTGGTGTTGCTGAT
TGGGCTGTGCCTAGCAATCATACCTCTGACCATCAGCATGGCTCGCATCCCTTCCTCAAAAGCCTGCGGC
CCATTTACCAACTTCAACACCACCTGGGAAGTGATTCCTCAGACTGTGAGCACCTTCCCCAGCTCGCTGC
AGACCCTGATCCATGCCGTTACATCAGAAGCCTTCGCGGTGCCTTTCTTCATGATCATCTGCCTTGTCAT
GTTCTACTTCATTGCACTGGCTGGAGCACACAAGCAGGTGGTTGTACAGCTTCGAGAGCAGCTGTCCCTG
GAGAGTCGTGACAAGCGTTATCTTATCCAGAAACTAACAGAAGCTCAAAGGGAGGTCCGGAGCCAGCCGG
CTTCAGCATGA

Translation (726 aa):
MSEGSAGDPGHGSSRQRAVHPENLSLGSSCFSPPVNFLQELPSYRSVARRRTNILSRDKQSGTLLKPTDS
FSCQLDGGITENLNSQSIRKYALNISEKRRLRDIQETQMKYLSEWDQWKRYSSKSWKRFLEKAREMTTHL
ELWRKDIRSIEGKFGTGIQSYFSFLRFLVVLNLVIFLIIFMLVLLPILLTKYKITNSTFVLIPFKDMDIQ
CTLYPISSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTIDGVKFQSFTYDLPLAYLISTIAYLALSLLW
IVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNRSMAELKHSSLRYELRADLEEERIRQKIAERTS
EETIRIYTLRLFLNCIVLAVLAACFYAIYLATAFSQEHMKKEIDKMVFGENLLILYLPSIVITLANFITP
IIFAKIIHYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSCGDSTCELCGYNQKLYPCWETQVG
QEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCASSKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSP
LLPAIATLKFVIIFYVKELSLLYTCRPSPRQFRASNSNFFFLLVLLIGLCLAIIPLTISMARIPSSKACG
PFTNFNTTWEVIPQTVSTFPSSLQTLIHAVTSEAFAVPFFMIICLVMFYFIALAGAHKQVVVQLREQLSL
ESRDKRYLIQKLTEAQREVRSQPASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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