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Report for CCDS29109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29109.1 Public Mus musculus 18 Syt4 23 108 98 CCDS HistoryNCBI Gene:20983Re-query CCDS DB by CCDS ID:29109.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025110.4 ENSMUSP00000025110.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025110.4Link to Ensembl Protein Viewer:ENSMUSP00000025110.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025110Re-query CCDS DB by Protein ID:ENSMUSP00000025110
Original member Current member NCBI NM_009308.3 NP_033334.2 Accepted alive Link to Nucleotide Sequence:NM_009308.3Link to Protein Sequence:NP_033334.2Re-query CCDS DB by Nucleotide ID:NM_009308Re-query CCDS DB by Protein ID:NP_033334Link to BLAST:NP_033334.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033334.2 425 P40749 425 100% 0 0

Chromosomal Locations for CCDS 29109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31440183 31440490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31441593 31441713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31443451 31444265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31447134 31447167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCTCCTATCACCACCAGCCGCGTGGAATTCGATGAAATTCCCACAGTGGTGGGCATCTTCAGTGCTT
TTGGCCTCGTCTTCACTGTCTCTCTCTTTGCCTGGATCTGCTGTCAGAGAAGATCAGCCAAATCCAACAA
GACTCCTCCATACAAGTTTGTGCACGTGCTTAAAGGAGTTGATATCTACCCAGAAAACCTAAGTAGCAAA
AAGAAGTTTGGAGGAGATGACAAGAGTGAAGTGAAGGGTAAAGCCGCTCTGCCCAACCTTTCCCTGCATC
TTGACCTAGAGAAGCGAGACCTCAATGGCAACTTCCCCAAAGCCAACCCCAAAGCTGGCAGCTCTTCTGA
TCTGGAAAATGTCACCCCAAAGCTCTTTACGGAGACAGAAAAGGAGGCCAATTCCCCTGAGAGCTTGAAG
TCCAGCACTTCCCTCACGTCAGAGGAGAAACAAGAGAAGCTGGGGACACTCTTCTTGTCTCTAGAGTACA
ACTTCGAGAAGAAAGCATTTGTGGTGAACATCAAGGAAGCCCAGGGCTTACCAGCCATGGACGAGCAATC
CATGACCTCTGACCCGTACATCAAAATGACAATCTTACCAGAGAAGAAGCACAGAGTGAAGACCAGAGTG
CTCAGGAAGACGCTGGACCCTGTTTTTGATGAAACCTTCACATTCTATGGAATCCCTTATCCCCACATCC
AAGAGCTCTCCTTGCACTTTACAGTTCTGAGTTTTGACAGGTTTTCTAGAGATGATGTCATTGGAGAAGT
CCTGATTCCTCTTTCAGGGATTGAATTATCAGATGGAAAAATGTTAATGACTAGAGAGATCATCAAGAGA
AATGCTAAGAAGTCTTCTGGCCGGGGTGAACTTCTGGTCTCTCTCTGTTATCAGTCCACTACAAACACGC
TCACTGTGGTGGTCTTAAAAGCGCGGCACCTACCGAAATCTGATGTGTCTGGACTTTCAGATCCCTACGT
CAAAGTGAACCTGTACCATGCCAAGAAGAGAATCTCTAAAAAGAAGACTCACGTTAAGAAATGCACTCCC
AACGCAGTGTTCAATGAACTGTTTGTCTTTGATATTCCTTGTGAGAGTCTTGAAGAAATCAGTGTTGAAT
TCTTGGTTTTGGATTCTGAAAGGGGATCCCGAAATGAGGTGATTGGACGGTTGGTCCTGGGTGCCACAGC
AGAAGGAAGCGGTGGGGGGCACTGGAAGGAGATCTGTGACTTCCCCAGGAGACAAATTGCTAAGTGGCAC
ATGCTCTGTGATGGTTAG

Translation (425 aa):
MAPITTSRVEFDEIPTVVGIFSAFGLVFTVSLFAWICCQRRSAKSNKTPPYKFVHVLKGVDIYPENLSSK
KKFGGDDKSEVKGKAALPNLSLHLDLEKRDLNGNFPKANPKAGSSSDLENVTPKLFTETEKEANSPESLK
SSTSLTSEEKQEKLGTLFLSLEYNFEKKAFVVNIKEAQGLPAMDEQSMTSDPYIKMTILPEKKHRVKTRV
LRKTLDPVFDETFTFYGIPYPHIQELSLHFTVLSFDRFSRDDVIGEVLIPLSGIELSDGKMLMTREIIKR
NAKKSSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTP
NAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWH
MLCDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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