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Report for CCDS8755.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8755.2 Public Homo sapiens 12 SLC48A1 24 110 108 CCDS HistoryNCBI Gene:55652Re-query CCDS DB by CCDS ID:8755.2Re-query CCDS DB by GeneID:55652See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8755.1
This CCDS ID has been updated to represent an alternative coding region that is better supported by available protein and publication (PMID:18418376) data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8755.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442218.3 ENSP00000415998.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442218.3Link to Ensembl Protein Viewer:ENSP00000415998.2Re-query CCDS DB by Nucleotide ID:ENST00000442218Re-query CCDS DB by Protein ID:ENSP00000415998
Original member Current member NCBI NM_017842.3 NP_060312.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017842.3Link to Protein Sequence:NP_060312.2Re-query CCDS DB by Nucleotide ID:NM_017842Re-query CCDS DB by Protein ID:NP_060312Link to BLAST:NP_060312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060312.2 146 Q6P1K1-1 146 100% 0 0

Chromosomal Locations for CCDS 8755.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47773305 47773440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47779028 47779195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47780145 47780281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCCCCGTCCAGGCTGCAGCTCGGCCTCCGCGCCGCCTACTCCGGCATCAGCTCCGTGGCCGGCTTCT
CCATCTTCCTCGTCTGGACGGTGGTCTACCGACAGCCGGGGACCGCGGCCATGGGAGGGCTCGCAGGGGT
GCTGGCACTGTGGGTCCTGGTGACGCACGTGATGTACATGCAAGATTATTGGAGGACCTGGCTCAAGGGG
CTGCGCGGCTTCTTCTTCGTGGGCGTCCTCTTCTCGGCCGTCTCCATCGCTGCCTTCTGCACCTTCCTCG
TGCTGGCCATCACCCGGCATCAGAGCCTCACAGACCCCACCAGCTACTACCTCTCCAGCGTCTGGAGCTT
CATTTCCTTCAAGTGGGCCTTCCTGCTCAGCCTCTATGCCCACCGCTACCGGGCTGACTTTGCTGACATC
AGCATCCTCAGCGATTTCTGA

Translation (146 aa):
MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWLKG
LRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISFKWAFLLSLYAHRYRADFADI
SILSDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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