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Report for CCDS26620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26620.1 Public Mus musculus 13 Mtrr 23 108 98 CCDS HistoryNCBI Gene:210009Re-query CCDS DB by CCDS ID:26620.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045827.4 ENSMUSP00000039810.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045827.4Link to Ensembl Protein Viewer:ENSMUSP00000039810.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045827Re-query CCDS DB by Protein ID:ENSMUSP00000039810
Original member Current member EBI ENSMUST00000223398.1 ENSMUSP00000152387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223398.1Link to Ensembl Protein Viewer:ENSMUSP00000152387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223398Re-query CCDS DB by Protein ID:ENSMUSP00000152387
Original member NCBI NM_001308475.1 NP_001295404.1 Updated not alive Link to Nucleotide Sequence:NM_001308475.1Link to Protein Sequence:NP_001295404.1Re-query CCDS DB by Nucleotide ID:NM_001308475Re-query CCDS DB by Protein ID:NP_001295404
Current member NCBI NM_001308475.2 NP_001295404.1 Accepted alive Link to Nucleotide Sequence:NM_001308475.2Link to Protein Sequence:NP_001295404.1Re-query CCDS DB by Nucleotide ID:NM_001308475Re-query CCDS DB by Protein ID:NP_001295404Link to BLAST:NP_001295404.1
Original member NCBI NM_172480.3 NP_766068.1 Updated not alive Link to Nucleotide Sequence:NM_172480.3Link to Protein Sequence:NP_766068.1Re-query CCDS DB by Nucleotide ID:NM_172480Re-query CCDS DB by Protein ID:NP_766068
Current member NCBI NM_172480.4 NP_766068.1 Accepted alive Link to Nucleotide Sequence:NM_172480.4Link to Protein Sequence:NP_766068.1Re-query CCDS DB by Nucleotide ID:NM_172480Re-query CCDS DB by Protein ID:NP_766068Link to BLAST:NP_766068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295404.1 696 Q8C1A3 696 99.1379% 0 6
NP_766068.1 696 Q8C1A3 696 99.1379% 0 6

Chromosomal Locations for CCDS 26620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 68562288 68562432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68564320 68564502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68564600 68564692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68565110 68565228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68566068 68566254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68566942 68566984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68568772 68568952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68570004 68570092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68571070 68571223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68572578 68572700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68575018 68575390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68577588 68577705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68579543 68579696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 68580551 68580679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGAGAAGGTTTTTGTTACTTTATGCTACACAGCGAGGACAGGCAAAGGCCATAGCAGAAGAAATAAGTG
AGCAGGCTGTGTCACACGGGTTTTCCGCAGATCTTCACTGTATCAGTGAGTCAGAAAAGTATGATCTGAA
AACAGAAACTGGCCCTCTGGTGATGGTTGTATCTACCACGGGTACAGGAGACCCACCTGACACAGCCCGG
AAGTTTGTTAAAGAAATACACAACAAGACACTCCCCACGGACTATTTTGCTCACCTGCAATATGGATTAT
TGGGCTTGGGTGACTCAGAATACACATACTTCTGCAATGGAGGGAAAGTAATTGATAAACGACTTCAGGA
GCTTGGAGCCCAGCGTTTCTACGACACCGGACATGCCGATGACTGTGTCGGTTTAGAGCTTGTGGTAGAG
CCGTGGATTGATGGACTCTGGGCTGCTCTCACAAAGCACTTTAAGTCACTCGGAGGACAAGAAAACATGA
GTGACACACTCTCACGAGCATCAGATGCCCCCTTGAGCACTGCCATGAAGCCGGAGTTGTTGCACATCCA
GTCACAAGTTGAACTGCTGAGATTAGAGGACATGGGGGAAAGGGATTCTGAGCTTCGGGAACAAAATGAG
ACAAACAGGGGTCAGCAGGGTCGGATCGAAGACTTTGACTCCTCGCTTGTGCACTCGGTCCCCCCACTCT
CCCAGAGCTCTCTAAGTATTCCTGCTGTGCCCCCAGAGTATTTGGAGGTCCATCTTCAAGAGTCTCTTGG
CCAGGAGGAAAACCAAGCATCTGTGCCTTCAGGGGATCCAAGTTTTCAAGTTCCAATTTCAAAAGCCATT
CGGCTGACTACAAATGATGCCGTAAAGAGCACTCTGCTGTTGGAACTGGACATTTCAAAAATAGAGTTTT
CCCATCAACCTGGAGACTCCTTCAATGTGACCTGTCCAAACAGTGATCGTGAGGTAGAAGAACTGCTCCA
AAGGCTGCAGCTGGCTGATAAACGAGCTCACCGTGTCATCTTGAAAATTAAGACGGACACTAAGAAGAAA
GGAGCTGCCCTGCCTGCGCATGTGCCTGAGGGGCGTTCTCTCCAGTTCATCCTCACCTGGTGTCTTGAAA
TACGAGCAGTTCCTAAAAAGGCCTTTTTGCGGGCCCTTGCCGAGCACACCAGCAGTGCCACTGAAAAGCG
GAGGCTGCAGGAGCTGTGCAGTAAACAAGGAGCCGCTGATTACAACCGCTTCATCCGAGATGCCAGCGTC
TGCCTGCTGGACCTCCTGCTCACCTTCCCGTCCTGCCAGCCTCCGCTCAGCCTACTGCTGGAGCACCTTC
CTAAACTTCAGCCTCGACCGTACTCATGTGCAAGCTCCAGCTTACGTCACCCAGACAAGCTTCACTTCGT
GTTTAACATCGTGGAGTTCCCACCTAGCACCACTGCAGCCTCCCTGAGGAAGGGAGTGTGCACGGGCTGG
CTAGCCACATTGGTTGCTCCATTCCTTCAGCCAAACACAGACGTTTCGAATGTAGACAGTGGTGACGCTC
TGGCTCCTGAGATACGTATCTCTCCTCGGGCAACAAACGCTTTCCACTTACCAGAGGACCCGTCGGCCCC
CATCATAATGGTGGGTCCAGGAACTGGCGTAGCCCCCTTTGTTGGCTTCCTCCAGCACAGAGAAAAACTT
CAAGAACAACACCCAGATGGGAAATTTGGAGCTATGTGGCTGTTCTTTGGCTGCAGACACAAGGACAGAG
ACTACTTGTTCAGGGAGGAGCTCAGGCATTTCCTCAAGACTGGGGTCTTGACTCATCTGAAGGTCTCGTT
CTCAAGAGACGCTGCCCCTGACGGGGAGGAGGCCCCAGCAAAGTATGTGCAAGACAACCTCCAGCGGCAC
AGCCAGCAGGTGGCCAGGACCCTCCTTCAGGAGAATGGCTACGTTTACGTGTGTGGAGACGCCAAGAATA
TGGCCAAGGACGTGAACGACACCCTCATAGGAATCATAAGCAATGAAGCTGGTGTTGACAAACTAGAAGC
AATGAAGACGCTGGCAACGTTAAAGCAAGAGAAACGATATCTGCAGGACATCTGGTCCTAA

Translation (696 aa):
MRRFLLLYATQRGQAKAIAEEISEQAVSHGFSADLHCISESEKYDLKTETGPLVMVVSTTGTGDPPDTAR
KFVKEIHNKTLPTDYFAHLQYGLLGLGDSEYTYFCNGGKVIDKRLQELGAQRFYDTGHADDCVGLELVVE
PWIDGLWAALTKHFKSLGGQENMSDTLSRASDAPLSTAMKPELLHIQSQVELLRLEDMGERDSELREQNE
TNRGQQGRIEDFDSSLVHSVPPLSQSSLSIPAVPPEYLEVHLQESLGQEENQASVPSGDPSFQVPISKAI
RLTTNDAVKSTLLLELDISKIEFSHQPGDSFNVTCPNSDREVEELLQRLQLADKRAHRVILKIKTDTKKK
GAALPAHVPEGRSLQFILTWCLEIRAVPKKAFLRALAEHTSSATEKRRLQELCSKQGAADYNRFIRDASV
CLLDLLLTFPSCQPPLSLLLEHLPKLQPRPYSCASSSLRHPDKLHFVFNIVEFPPSTTAASLRKGVCTGW
LATLVAPFLQPNTDVSNVDSGDALAPEIRISPRATNAFHLPEDPSAPIIMVGPGTGVAPFVGFLQHREKL
QEQHPDGKFGAMWLFFGCRHKDRDYLFREELRHFLKTGVLTHLKVSFSRDAAPDGEEAPAKYVQDNLQRH
SQQVARTLLQENGYVYVCGDAKNMAKDVNDTLIGIISNEAGVDKLEAMKTLATLKQEKRYLQDIWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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